Cargando…

Chromogenic medium versus PCR–RFLP in the speciation of Candida: a comparative study

OBJECTIVE: Candida species is implicated in a wide array of clinical infections. Speciation of Candida strains is of prime importance in the epidemiological survey and laboratory diagnosis as there is an upswing of antifungal resistance and changing trends in the antifungal resistance pattern among...

Descripción completa

Detalles Bibliográficos
Autores principales: Leena Sankari, Sankar, Mahalakshmi, Krishnan, Naveen Kumar, Venkatesan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6805376/
https://www.ncbi.nlm.nih.gov/pubmed/31640775
http://dx.doi.org/10.1186/s13104-019-4710-5
_version_ 1783461369046106112
author Leena Sankari, Sankar
Mahalakshmi, Krishnan
Naveen Kumar, Venkatesan
author_facet Leena Sankari, Sankar
Mahalakshmi, Krishnan
Naveen Kumar, Venkatesan
author_sort Leena Sankari, Sankar
collection PubMed
description OBJECTIVE: Candida species is implicated in a wide array of clinical infections. Speciation of Candida strains is of prime importance in the epidemiological survey and laboratory diagnosis as there is an upswing of antifungal resistance and changing trends in the antifungal resistance pattern among C. albicans and non albicans Candida. Varied phenotypic methods are available for the identification of Candida species which vary in principles and cost factors. Chromogenic agar medium (HiCrome Candida differential agar) is one of the preferred phenotypic methods in limited resource laboratories. Hence, this study was aimed to assess the reliability of HiCrome Candida differential agar, M1297A (HiMedia) in the identification of Candida species compared polymerase chain reaction–restriction fragment length polymorphism (PCR–RFLP). Oral Candida isolates (n = 194) were inoculated onto HiCrome Candida differential agar and the potential of Candida differential Agar was compared with PCR–RFLP. RESULTS: The results were not in agreement with PCR–RFLP. Percentage of disagreement was 40.2, 50.0, 100.0 and 25.0 for Candida albicans, Candida krusei, Candida glabrata and Candida tropicalis respectively. PCR–RFLP demonstrated a very high discriminatory power in the identification of Candida species compared to agar.
format Online
Article
Text
id pubmed-6805376
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-68053762019-10-24 Chromogenic medium versus PCR–RFLP in the speciation of Candida: a comparative study Leena Sankari, Sankar Mahalakshmi, Krishnan Naveen Kumar, Venkatesan BMC Res Notes Research Note OBJECTIVE: Candida species is implicated in a wide array of clinical infections. Speciation of Candida strains is of prime importance in the epidemiological survey and laboratory diagnosis as there is an upswing of antifungal resistance and changing trends in the antifungal resistance pattern among C. albicans and non albicans Candida. Varied phenotypic methods are available for the identification of Candida species which vary in principles and cost factors. Chromogenic agar medium (HiCrome Candida differential agar) is one of the preferred phenotypic methods in limited resource laboratories. Hence, this study was aimed to assess the reliability of HiCrome Candida differential agar, M1297A (HiMedia) in the identification of Candida species compared polymerase chain reaction–restriction fragment length polymorphism (PCR–RFLP). Oral Candida isolates (n = 194) were inoculated onto HiCrome Candida differential agar and the potential of Candida differential Agar was compared with PCR–RFLP. RESULTS: The results were not in agreement with PCR–RFLP. Percentage of disagreement was 40.2, 50.0, 100.0 and 25.0 for Candida albicans, Candida krusei, Candida glabrata and Candida tropicalis respectively. PCR–RFLP demonstrated a very high discriminatory power in the identification of Candida species compared to agar. BioMed Central 2019-10-22 /pmc/articles/PMC6805376/ /pubmed/31640775 http://dx.doi.org/10.1186/s13104-019-4710-5 Text en © The Author(s) 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research Note
Leena Sankari, Sankar
Mahalakshmi, Krishnan
Naveen Kumar, Venkatesan
Chromogenic medium versus PCR–RFLP in the speciation of Candida: a comparative study
title Chromogenic medium versus PCR–RFLP in the speciation of Candida: a comparative study
title_full Chromogenic medium versus PCR–RFLP in the speciation of Candida: a comparative study
title_fullStr Chromogenic medium versus PCR–RFLP in the speciation of Candida: a comparative study
title_full_unstemmed Chromogenic medium versus PCR–RFLP in the speciation of Candida: a comparative study
title_short Chromogenic medium versus PCR–RFLP in the speciation of Candida: a comparative study
title_sort chromogenic medium versus pcr–rflp in the speciation of candida: a comparative study
topic Research Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6805376/
https://www.ncbi.nlm.nih.gov/pubmed/31640775
http://dx.doi.org/10.1186/s13104-019-4710-5
work_keys_str_mv AT leenasankarisankar chromogenicmediumversuspcrrflpinthespeciationofcandidaacomparativestudy
AT mahalakshmikrishnan chromogenicmediumversuspcrrflpinthespeciationofcandidaacomparativestudy
AT naveenkumarvenkatesan chromogenicmediumversuspcrrflpinthespeciationofcandidaacomparativestudy