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Evaluation of the performance of register data as indicators for dairy herds with high lameness prevalence

BACKGROUND: The modern dairy industry routinely generates data on production and disease. Therefore, the use of these cheap and at times even “free” data to predict a given state of welfare in a cost-effective manner is evaluated in the present study. Such register data could potentially be used in...

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Autores principales: Otten, Nina Dam, Toft, Nils, Thomsen, Peter Thorup, Houe, Hans
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6805377/
https://www.ncbi.nlm.nih.gov/pubmed/31639021
http://dx.doi.org/10.1186/s13028-019-0484-y
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author Otten, Nina Dam
Toft, Nils
Thomsen, Peter Thorup
Houe, Hans
author_facet Otten, Nina Dam
Toft, Nils
Thomsen, Peter Thorup
Houe, Hans
author_sort Otten, Nina Dam
collection PubMed
description BACKGROUND: The modern dairy industry routinely generates data on production and disease. Therefore, the use of these cheap and at times even “free” data to predict a given state of welfare in a cost-effective manner is evaluated in the present study. Such register data could potentially be used in the identification of herds at risk of having animal welfare problems. The present study evaluated the diagnostic performance of four routinely registered indicators for identifying herds with high lameness prevalence among 40 Danish dairy herds. Indicators were extracted as within-herd annual means for a one-year period for cow mortality, bulk milk somatic cell count, proportion of lean cows at slaughter and the standard deviation (SD) of age at first calving. The target condition “high lameness prevalence” was defined as a within-herd prevalence of lame cows of  ≥ 16% (third quartile). Diagnostic performance was evaluated by constructing and analysing Receiver Operating Characteristic curves and their area under the curve (AUC) for single indicators and indicator combinations. Sensitivity (Se) and specificity (Sp) of the indicators were assessed at the optimal cut-off based on data and compared to a set of predefined cut-off levels (national annual means or 90-percentile). RESULTS: Cow mortality had the highest AUC (0.76), while adding the three other indicators to the model did not yield significant increase in AUC. Cow mortality and SD of age at first calving had highest Se (100%, 95% confidence interval (CI): 72–100%), while highest Sp was found for the proportion of lean cows at slaughter (83%, 95% CI: 66–93%). The highest differential positive rate (DPR = 0.53) optimizing both Se and Sp was found for cow mortality. Optimal cut-off points were lower than the presently used pre-defined cut-offs. CONCLUSIONS: The selected register-based indicators proved to be able to identify herds with high lameness prevalences. Optimized cut-offs improved the predictive ability and should therefore be preferred in official control schemes.
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spelling pubmed-68053772019-10-24 Evaluation of the performance of register data as indicators for dairy herds with high lameness prevalence Otten, Nina Dam Toft, Nils Thomsen, Peter Thorup Houe, Hans Acta Vet Scand Research BACKGROUND: The modern dairy industry routinely generates data on production and disease. Therefore, the use of these cheap and at times even “free” data to predict a given state of welfare in a cost-effective manner is evaluated in the present study. Such register data could potentially be used in the identification of herds at risk of having animal welfare problems. The present study evaluated the diagnostic performance of four routinely registered indicators for identifying herds with high lameness prevalence among 40 Danish dairy herds. Indicators were extracted as within-herd annual means for a one-year period for cow mortality, bulk milk somatic cell count, proportion of lean cows at slaughter and the standard deviation (SD) of age at first calving. The target condition “high lameness prevalence” was defined as a within-herd prevalence of lame cows of  ≥ 16% (third quartile). Diagnostic performance was evaluated by constructing and analysing Receiver Operating Characteristic curves and their area under the curve (AUC) for single indicators and indicator combinations. Sensitivity (Se) and specificity (Sp) of the indicators were assessed at the optimal cut-off based on data and compared to a set of predefined cut-off levels (national annual means or 90-percentile). RESULTS: Cow mortality had the highest AUC (0.76), while adding the three other indicators to the model did not yield significant increase in AUC. Cow mortality and SD of age at first calving had highest Se (100%, 95% confidence interval (CI): 72–100%), while highest Sp was found for the proportion of lean cows at slaughter (83%, 95% CI: 66–93%). The highest differential positive rate (DPR = 0.53) optimizing both Se and Sp was found for cow mortality. Optimal cut-off points were lower than the presently used pre-defined cut-offs. CONCLUSIONS: The selected register-based indicators proved to be able to identify herds with high lameness prevalences. Optimized cut-offs improved the predictive ability and should therefore be preferred in official control schemes. BioMed Central 2019-10-21 /pmc/articles/PMC6805377/ /pubmed/31639021 http://dx.doi.org/10.1186/s13028-019-0484-y Text en © The Author(s) 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research
Otten, Nina Dam
Toft, Nils
Thomsen, Peter Thorup
Houe, Hans
Evaluation of the performance of register data as indicators for dairy herds with high lameness prevalence
title Evaluation of the performance of register data as indicators for dairy herds with high lameness prevalence
title_full Evaluation of the performance of register data as indicators for dairy herds with high lameness prevalence
title_fullStr Evaluation of the performance of register data as indicators for dairy herds with high lameness prevalence
title_full_unstemmed Evaluation of the performance of register data as indicators for dairy herds with high lameness prevalence
title_short Evaluation of the performance of register data as indicators for dairy herds with high lameness prevalence
title_sort evaluation of the performance of register data as indicators for dairy herds with high lameness prevalence
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6805377/
https://www.ncbi.nlm.nih.gov/pubmed/31639021
http://dx.doi.org/10.1186/s13028-019-0484-y
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