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Radiogenomic analysis of vascular endothelial growth factor in patients with diffuse gliomas
OBJECTIVE: To predict vascular endothelial growth factor (VEGF) expression in patients with diffuse gliomas using radiomic analysis. MATERIALS AND METHODS: Preoperative magnetic resonance images were retrospectively obtained from 239 patients with diffuse gliomas (World Health Organization grades II...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6805458/ https://www.ncbi.nlm.nih.gov/pubmed/31639060 http://dx.doi.org/10.1186/s40644-019-0256-y |
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author | Sun, Zhiyan Li, Yiming Wang, Yinyan Fan, Xing Xu, Kaibin Wang, Kai Li, Shaowu Zhang, Zhong Jiang, Tao Liu, Xing |
author_facet | Sun, Zhiyan Li, Yiming Wang, Yinyan Fan, Xing Xu, Kaibin Wang, Kai Li, Shaowu Zhang, Zhong Jiang, Tao Liu, Xing |
author_sort | Sun, Zhiyan |
collection | PubMed |
description | OBJECTIVE: To predict vascular endothelial growth factor (VEGF) expression in patients with diffuse gliomas using radiomic analysis. MATERIALS AND METHODS: Preoperative magnetic resonance images were retrospectively obtained from 239 patients with diffuse gliomas (World Health Organization grades II–IV). The patients were randomly assigned to a training group (n = 160) or a validation group (n = 79) at a 2:1 ratio. For each patient, a total of 431 radiomic features were extracted. The minimum redundancy maximum relevance (mRMR) algorithm was used for feature selection. A machine-learning model for predicting VEGF status was then developed using the selected features and a support vector machine classifier. The predictive performance of the model was evaluated in both groups using receiver operating characteristic curve analysis, and correlations between selected features were assessed. RESULTS: Nine radiomic features were selected to generate a VEGF-associated radiomic signature of diffuse gliomas based on the mRMR algorithm. This radiomic signature consisted of two first-order statistics or related wavelet features (Entropy and Minimum) and seven textural features or related wavelet features (including Cluster Tendency and Long Run Low Gray Level Emphasis). The predictive efficiencies measured by the area under the curve were 74.1% in the training group and 70.2% in the validation group. The overall correlations between the 9 radiomic features were low in both groups. CONCLUSIONS: Radiomic analysis facilitated efficient prediction of VEGF status in diffuse gliomas, suggesting that using tumor-derived radiomic features for predicting genomic information is feasible. |
format | Online Article Text |
id | pubmed-6805458 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-68054582019-10-24 Radiogenomic analysis of vascular endothelial growth factor in patients with diffuse gliomas Sun, Zhiyan Li, Yiming Wang, Yinyan Fan, Xing Xu, Kaibin Wang, Kai Li, Shaowu Zhang, Zhong Jiang, Tao Liu, Xing Cancer Imaging Research Article OBJECTIVE: To predict vascular endothelial growth factor (VEGF) expression in patients with diffuse gliomas using radiomic analysis. MATERIALS AND METHODS: Preoperative magnetic resonance images were retrospectively obtained from 239 patients with diffuse gliomas (World Health Organization grades II–IV). The patients were randomly assigned to a training group (n = 160) or a validation group (n = 79) at a 2:1 ratio. For each patient, a total of 431 radiomic features were extracted. The minimum redundancy maximum relevance (mRMR) algorithm was used for feature selection. A machine-learning model for predicting VEGF status was then developed using the selected features and a support vector machine classifier. The predictive performance of the model was evaluated in both groups using receiver operating characteristic curve analysis, and correlations between selected features were assessed. RESULTS: Nine radiomic features were selected to generate a VEGF-associated radiomic signature of diffuse gliomas based on the mRMR algorithm. This radiomic signature consisted of two first-order statistics or related wavelet features (Entropy and Minimum) and seven textural features or related wavelet features (including Cluster Tendency and Long Run Low Gray Level Emphasis). The predictive efficiencies measured by the area under the curve were 74.1% in the training group and 70.2% in the validation group. The overall correlations between the 9 radiomic features were low in both groups. CONCLUSIONS: Radiomic analysis facilitated efficient prediction of VEGF status in diffuse gliomas, suggesting that using tumor-derived radiomic features for predicting genomic information is feasible. BioMed Central 2019-10-21 /pmc/articles/PMC6805458/ /pubmed/31639060 http://dx.doi.org/10.1186/s40644-019-0256-y Text en © The Author(s). 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Article Sun, Zhiyan Li, Yiming Wang, Yinyan Fan, Xing Xu, Kaibin Wang, Kai Li, Shaowu Zhang, Zhong Jiang, Tao Liu, Xing Radiogenomic analysis of vascular endothelial growth factor in patients with diffuse gliomas |
title | Radiogenomic analysis of vascular endothelial growth factor in patients with diffuse gliomas |
title_full | Radiogenomic analysis of vascular endothelial growth factor in patients with diffuse gliomas |
title_fullStr | Radiogenomic analysis of vascular endothelial growth factor in patients with diffuse gliomas |
title_full_unstemmed | Radiogenomic analysis of vascular endothelial growth factor in patients with diffuse gliomas |
title_short | Radiogenomic analysis of vascular endothelial growth factor in patients with diffuse gliomas |
title_sort | radiogenomic analysis of vascular endothelial growth factor in patients with diffuse gliomas |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6805458/ https://www.ncbi.nlm.nih.gov/pubmed/31639060 http://dx.doi.org/10.1186/s40644-019-0256-y |
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