Cargando…

Radiogenomic analysis of vascular endothelial growth factor in patients with diffuse gliomas

OBJECTIVE: To predict vascular endothelial growth factor (VEGF) expression in patients with diffuse gliomas using radiomic analysis. MATERIALS AND METHODS: Preoperative magnetic resonance images were retrospectively obtained from 239 patients with diffuse gliomas (World Health Organization grades II...

Descripción completa

Detalles Bibliográficos
Autores principales: Sun, Zhiyan, Li, Yiming, Wang, Yinyan, Fan, Xing, Xu, Kaibin, Wang, Kai, Li, Shaowu, Zhang, Zhong, Jiang, Tao, Liu, Xing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6805458/
https://www.ncbi.nlm.nih.gov/pubmed/31639060
http://dx.doi.org/10.1186/s40644-019-0256-y
_version_ 1783461389263699968
author Sun, Zhiyan
Li, Yiming
Wang, Yinyan
Fan, Xing
Xu, Kaibin
Wang, Kai
Li, Shaowu
Zhang, Zhong
Jiang, Tao
Liu, Xing
author_facet Sun, Zhiyan
Li, Yiming
Wang, Yinyan
Fan, Xing
Xu, Kaibin
Wang, Kai
Li, Shaowu
Zhang, Zhong
Jiang, Tao
Liu, Xing
author_sort Sun, Zhiyan
collection PubMed
description OBJECTIVE: To predict vascular endothelial growth factor (VEGF) expression in patients with diffuse gliomas using radiomic analysis. MATERIALS AND METHODS: Preoperative magnetic resonance images were retrospectively obtained from 239 patients with diffuse gliomas (World Health Organization grades II–IV). The patients were randomly assigned to a training group (n = 160) or a validation group (n = 79) at a 2:1 ratio. For each patient, a total of 431 radiomic features were extracted. The minimum redundancy maximum relevance (mRMR) algorithm was used for feature selection. A machine-learning model for predicting VEGF status was then developed using the selected features and a support vector machine classifier. The predictive performance of the model was evaluated in both groups using receiver operating characteristic curve analysis, and correlations between selected features were assessed. RESULTS: Nine radiomic features were selected to generate a VEGF-associated radiomic signature of diffuse gliomas based on the mRMR algorithm. This radiomic signature consisted of two first-order statistics or related wavelet features (Entropy and Minimum) and seven textural features or related wavelet features (including Cluster Tendency and Long Run Low Gray Level Emphasis). The predictive efficiencies measured by the area under the curve were 74.1% in the training group and 70.2% in the validation group. The overall correlations between the 9 radiomic features were low in both groups. CONCLUSIONS: Radiomic analysis facilitated efficient prediction of VEGF status in diffuse gliomas, suggesting that using tumor-derived radiomic features for predicting genomic information is feasible.
format Online
Article
Text
id pubmed-6805458
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-68054582019-10-24 Radiogenomic analysis of vascular endothelial growth factor in patients with diffuse gliomas Sun, Zhiyan Li, Yiming Wang, Yinyan Fan, Xing Xu, Kaibin Wang, Kai Li, Shaowu Zhang, Zhong Jiang, Tao Liu, Xing Cancer Imaging Research Article OBJECTIVE: To predict vascular endothelial growth factor (VEGF) expression in patients with diffuse gliomas using radiomic analysis. MATERIALS AND METHODS: Preoperative magnetic resonance images were retrospectively obtained from 239 patients with diffuse gliomas (World Health Organization grades II–IV). The patients were randomly assigned to a training group (n = 160) or a validation group (n = 79) at a 2:1 ratio. For each patient, a total of 431 radiomic features were extracted. The minimum redundancy maximum relevance (mRMR) algorithm was used for feature selection. A machine-learning model for predicting VEGF status was then developed using the selected features and a support vector machine classifier. The predictive performance of the model was evaluated in both groups using receiver operating characteristic curve analysis, and correlations between selected features were assessed. RESULTS: Nine radiomic features were selected to generate a VEGF-associated radiomic signature of diffuse gliomas based on the mRMR algorithm. This radiomic signature consisted of two first-order statistics or related wavelet features (Entropy and Minimum) and seven textural features or related wavelet features (including Cluster Tendency and Long Run Low Gray Level Emphasis). The predictive efficiencies measured by the area under the curve were 74.1% in the training group and 70.2% in the validation group. The overall correlations between the 9 radiomic features were low in both groups. CONCLUSIONS: Radiomic analysis facilitated efficient prediction of VEGF status in diffuse gliomas, suggesting that using tumor-derived radiomic features for predicting genomic information is feasible. BioMed Central 2019-10-21 /pmc/articles/PMC6805458/ /pubmed/31639060 http://dx.doi.org/10.1186/s40644-019-0256-y Text en © The Author(s). 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research Article
Sun, Zhiyan
Li, Yiming
Wang, Yinyan
Fan, Xing
Xu, Kaibin
Wang, Kai
Li, Shaowu
Zhang, Zhong
Jiang, Tao
Liu, Xing
Radiogenomic analysis of vascular endothelial growth factor in patients with diffuse gliomas
title Radiogenomic analysis of vascular endothelial growth factor in patients with diffuse gliomas
title_full Radiogenomic analysis of vascular endothelial growth factor in patients with diffuse gliomas
title_fullStr Radiogenomic analysis of vascular endothelial growth factor in patients with diffuse gliomas
title_full_unstemmed Radiogenomic analysis of vascular endothelial growth factor in patients with diffuse gliomas
title_short Radiogenomic analysis of vascular endothelial growth factor in patients with diffuse gliomas
title_sort radiogenomic analysis of vascular endothelial growth factor in patients with diffuse gliomas
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6805458/
https://www.ncbi.nlm.nih.gov/pubmed/31639060
http://dx.doi.org/10.1186/s40644-019-0256-y
work_keys_str_mv AT sunzhiyan radiogenomicanalysisofvascularendothelialgrowthfactorinpatientswithdiffusegliomas
AT liyiming radiogenomicanalysisofvascularendothelialgrowthfactorinpatientswithdiffusegliomas
AT wangyinyan radiogenomicanalysisofvascularendothelialgrowthfactorinpatientswithdiffusegliomas
AT fanxing radiogenomicanalysisofvascularendothelialgrowthfactorinpatientswithdiffusegliomas
AT xukaibin radiogenomicanalysisofvascularendothelialgrowthfactorinpatientswithdiffusegliomas
AT wangkai radiogenomicanalysisofvascularendothelialgrowthfactorinpatientswithdiffusegliomas
AT lishaowu radiogenomicanalysisofvascularendothelialgrowthfactorinpatientswithdiffusegliomas
AT zhangzhong radiogenomicanalysisofvascularendothelialgrowthfactorinpatientswithdiffusegliomas
AT jiangtao radiogenomicanalysisofvascularendothelialgrowthfactorinpatientswithdiffusegliomas
AT liuxing radiogenomicanalysisofvascularendothelialgrowthfactorinpatientswithdiffusegliomas