Cargando…

In silico-guided engineering of Pseudomonas putida towards growth under micro-oxic conditions

BACKGROUND: Pseudomonas putida is a metabolically versatile, genetically accessible, and stress-robust species with outstanding potential to be used as a workhorse for industrial applications. While industry recognises the importance of robustness under micro-oxic conditions for a stable production...

Descripción completa

Detalles Bibliográficos
Autores principales:	Kampers, Linde F. C., van Heck, Ruben G. A., Donati, Stefano, Saccenti, Edoardo, Volkers, Rita J. M., Schaap, Peter J., Suarez-Diez, Maria, Nikel, Pablo I., Martins dos Santos, Vitor A. P.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2019
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6805499/ https://www.ncbi.nlm.nih.gov/pubmed/31640713 http://dx.doi.org/10.1186/s12934-019-1227-5

Ejemplares similares

Pseudomonas putida KT2440 is HV1 certified, not GRAS
por: Kampers, Linde F. C., et al.
Publicado: (2019)

A metabolic and physiological design study of Pseudomonas putida KT2440 capable of anaerobic respiration
por: Kampers, Linde F. C., et al.
Publicado: (2021)

An expanded CRISPRi toolbox for tunable control of gene expression in Pseudomonas putida
por: Batianis, Christos, et al.
Publicado: (2020)

Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data
por: Koehorst, Jasper J., et al.
Publicado: (2016)

Industrial biotechnology of Pseudomonas putida: advances and prospects
por: Weimer, Anna, et al.
Publicado: (2020)

Genome reduction boosts heterologous gene expression in Pseudomonas putida
por: Lieder, Sarah, et al.
Publicado: (2015)

Genomotyping of Pseudomonas putida strains using P. putida KT2440-based high-density DNA microarrays: implications for transcriptomics studies
por: Ballerstedt, Hendrik, et al.
Publicado: (2007)

Core and auxiliary functions of one-carbon metabolism in Pseudomonas putida exposed by a systems-level analysis of transcriptional and physiological responses
por: Turlin, Justine, et al.
Publicado: (2023)

A Metabolic Widget Adjusts the Phosphoenolpyruvate-Dependent Fructose Influx in Pseudomonas putida
por: Chavarría, Max, et al.
Publicado: (2016)

Combinatorial pathway balancing provides biosynthetic access to 2-fluoro-cis,cis-muconate in engineered Pseudomonas putida
por: Wirth, Nicolas T., et al.
Publicado: (2021)

Role of the CrcB transporter of Pseudomonas putida in the multi‐level stress response elicited by mineral fluoride
por: Calero, Patricia, et al.
Publicado: (2022)

Optimized enantioselective (S)-2-hydroxypropiophenone synthesis by free- and encapsulated-resting cells of Pseudomonas putida
por: Kordesedehi, Reihaneh, et al.
Publicado: (2023)

Accelerated genome engineering of Pseudomonas putida by I‐SceI―mediated recombination and CRISPR‐Cas9 counterselection
por: Wirth, Nicolas T., et al.
Publicado: (2019)

Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics
por: Koehorst, Jasper J., et al.
Publicado: (2017)

Reconfiguration of metabolic fluxes in Pseudomonas putida as a response to sub-lethal oxidative stress
por: Nikel, Pablo I., et al.
Publicado: (2021)

Recursive genome engineering decodes the evolutionary origin of an essential thymidylate kinase activity in Pseudomonas putida KT2440
por: Wirth, Nicolas T., et al.
Publicado: (2023)

A fluoride-responsive genetic circuit enables in vivo biofluorination in engineered Pseudomonas putida
por: Calero, Patricia, et al.
Publicado: (2020)

High‐throughput dilution‐based growth method enables time‐resolved exo‐metabolomics of Pseudomonas putida and Pseudomonas aeruginosa
por: Pedersen, Bjarke H., et al.
Publicado: (2021)

Accumulation of inorganic polyphosphate enables stress endurance and catalytic vigour in Pseudomonas putida KT2440
por: Nikel, Pablo I, et al.
Publicado: (2013)

The Metabolic Redox Regime of Pseudomonas putida Tunes Its Evolvability toward Novel Xenobiotic Substrates
por: Akkaya, Özlem, et al.
Publicado: (2018)

Biotransformation of 2,4‐dinitrotoluene in a phototrophic co‐culture of engineered Synechococcus elongatus and Pseudomonas putida
por: Fedeson, Derek T., et al.
Publicado: (2020)

Pseudomonas 2.0: genetic upgrading of P. putida KT2440 as an enhanced host for heterologous gene expression
por: Martínez-García, Esteban, et al.
Publicado: (2014)

Physical decoupling of XylS/Pm regulatory elements and conditional proteolysis enable precise control of gene expression in Pseudomonas putida
por: Volke, Daniel C., et al.
Publicado: (2019)

Synthetic control of plasmid replication enables target- and self-curing of vectors and expedites genome engineering of Pseudomonas putida
por: Volke, Daniel C., et al.
Publicado: (2020)

Reconciling in vivo and in silico key biological parameters of Pseudomonas putida KT2440 during growth on glucose under carbon-limited condition
por: van Duuren, Jozef BJH, et al.
Publicado: (2013)

Random and cyclical deletion of large DNA segments in the genome of Pseudomonas putida
por: Leprince, Audrey, et al.
Publicado: (2012)

Cofactor Specificity of Glucose-6-Phosphate Dehydrogenase Isozymes in Pseudomonas putida Reveals a General Principle Underlying Glycolytic Strategies in Bacteria
por: Volke, Daniel Christoph, et al.
Publicado: (2021)

Modeling and analysis of flux distributions in the two branches of the phosphotransferase system in Pseudomonas putida
por: Kremling, Andreas, et al.
Publicado: (2012)

The Glycerol-Dependent Metabolic Persistence of Pseudomonas putida KT2440 Reflects the Regulatory Logic of the GlpR Repressor
por: Nikel, Pablo I., et al.
Publicado: (2015)

Phosphite synthetic auxotrophy as an effective biocontainment strategy for the industrial chassis Pseudomonas putida
por: Asin-Garcia, Enrique, et al.
Publicado: (2022)

Comparative transcriptomics and proteomics of p-hydroxybenzoate producing Pseudomonas putida S12: novel responses and implications for strain improvement
por: Verhoef, Suzanne, et al.
Publicado: (2010)

Consistency, Inconsistency, and Ambiguity of Metabolite Names in Biochemical Databases Used for Genome-Scale Metabolic Modelling
por: Pham, Nhung, et al.
Publicado: (2019)

Dynamic Response of Pseudomonas putida S12 to Sudden Addition of Toluene and the Potential Role of the Solvent Tolerance Gene trgI
por: Volkers, Rita J. M., et al.
Publicado: (2015)

SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles
por: Koehorst, Jasper J, et al.
Publicado: (2018)

Increasing cellular fitness and product yields in Pseudomonas putida through an engineered phosphoketolase shunt
por: Bruinsma, Lyon, et al.
Publicado: (2023)

Phenotype and multi-omics comparison of Staphylococcus and Streptococcus uncovers pathogenic traits and predicts zoonotic potential
por: Zondervan, Niels A., et al.
Publicado: (2021)

Correction to: Phenotype and multi-omics comparison of Staphylococcus and Streptococcus uncovers pathogenic traits and predicts zoonotic potential
por: Zondervan, Niels A., et al.
Publicado: (2021)

Pathogenic significance of Pseudomonas fluorescens and Pseudomonas putida.
por: Von Graevenitz, A., et al.
Publicado: (1971)

Microbial stratification in low pH oxic and suboxic macroscopic growths along an acid mine drainage
por: Méndez-García, Celia, et al.
Publicado: (2014)

Pseudomonas putida mt-2 tolerates reactive oxygen species generated during matric stress by inducing a major oxidative defense response
por: Svenningsen, Nanna B., et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_0tjk8mupm3csi5uhvpolvp8pkc