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Distributed radiomics as a signature validation study using the Personal Health Train infrastructure

Prediction modelling with radiomics is a rapidly developing research topic that requires access to vast amounts of imaging data. Methods that work on decentralized data are urgently needed, because of concerns about patient privacy. Previously published computed tomography medical image sets with gr...

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Autores principales: Shi, Zhenwei, Zhovannik, Ivan, Traverso, Alberto, Dankers, Frank J. W. M., Deist, Timo M., Kalendralis, Petros, Monshouwer, René, Bussink, Johan, Fijten, Rianne, Aerts, Hugo J. W. L., Dekker, Andre, Wee, Leonard
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6805885/
https://www.ncbi.nlm.nih.gov/pubmed/31641134
http://dx.doi.org/10.1038/s41597-019-0241-0
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author Shi, Zhenwei
Zhovannik, Ivan
Traverso, Alberto
Dankers, Frank J. W. M.
Deist, Timo M.
Kalendralis, Petros
Monshouwer, René
Bussink, Johan
Fijten, Rianne
Aerts, Hugo J. W. L.
Dekker, Andre
Wee, Leonard
author_facet Shi, Zhenwei
Zhovannik, Ivan
Traverso, Alberto
Dankers, Frank J. W. M.
Deist, Timo M.
Kalendralis, Petros
Monshouwer, René
Bussink, Johan
Fijten, Rianne
Aerts, Hugo J. W. L.
Dekker, Andre
Wee, Leonard
author_sort Shi, Zhenwei
collection PubMed
description Prediction modelling with radiomics is a rapidly developing research topic that requires access to vast amounts of imaging data. Methods that work on decentralized data are urgently needed, because of concerns about patient privacy. Previously published computed tomography medical image sets with gross tumour volume (GTV) outlines for non-small cell lung cancer have been updated with extended follow-up. In a previous study, these were referred to as Lung1 (n = 421) and Lung2 (n = 221). The Lung1 dataset is made publicly accessible via The Cancer Imaging Archive (TCIA; https://www.cancerimagingarchive.net). We performed a decentralized multi-centre study to develop a radiomic signature (hereafter “ZS2019”) in one institution and validated the performance in an independent institution, without the need for data exchange and compared this to an analysis where all data was centralized. The performance of ZS2019 for 2-year overall survival validated in distributed radiomics was not statistically different from the centralized validation (AUC 0.61 vs 0.61; p = 0.52). Although slightly different in terms of data and methods, no statistically significant difference in performance was observed between the new signature and previous work (c-index 0.58 vs 0.65; p = 0.37). Our objective was not the development of a new signature with the best performance, but to suggest an approach for distributed radiomics. Therefore, we used a similar method as an earlier study. We foresee that the Lung1 dataset can be further re-used for testing radiomic models and investigating feature reproducibility.
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spelling pubmed-68058852019-10-30 Distributed radiomics as a signature validation study using the Personal Health Train infrastructure Shi, Zhenwei Zhovannik, Ivan Traverso, Alberto Dankers, Frank J. W. M. Deist, Timo M. Kalendralis, Petros Monshouwer, René Bussink, Johan Fijten, Rianne Aerts, Hugo J. W. L. Dekker, Andre Wee, Leonard Sci Data Article Prediction modelling with radiomics is a rapidly developing research topic that requires access to vast amounts of imaging data. Methods that work on decentralized data are urgently needed, because of concerns about patient privacy. Previously published computed tomography medical image sets with gross tumour volume (GTV) outlines for non-small cell lung cancer have been updated with extended follow-up. In a previous study, these were referred to as Lung1 (n = 421) and Lung2 (n = 221). The Lung1 dataset is made publicly accessible via The Cancer Imaging Archive (TCIA; https://www.cancerimagingarchive.net). We performed a decentralized multi-centre study to develop a radiomic signature (hereafter “ZS2019”) in one institution and validated the performance in an independent institution, without the need for data exchange and compared this to an analysis where all data was centralized. The performance of ZS2019 for 2-year overall survival validated in distributed radiomics was not statistically different from the centralized validation (AUC 0.61 vs 0.61; p = 0.52). Although slightly different in terms of data and methods, no statistically significant difference in performance was observed between the new signature and previous work (c-index 0.58 vs 0.65; p = 0.37). Our objective was not the development of a new signature with the best performance, but to suggest an approach for distributed radiomics. Therefore, we used a similar method as an earlier study. We foresee that the Lung1 dataset can be further re-used for testing radiomic models and investigating feature reproducibility. Nature Publishing Group UK 2019-10-22 /pmc/articles/PMC6805885/ /pubmed/31641134 http://dx.doi.org/10.1038/s41597-019-0241-0 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Shi, Zhenwei
Zhovannik, Ivan
Traverso, Alberto
Dankers, Frank J. W. M.
Deist, Timo M.
Kalendralis, Petros
Monshouwer, René
Bussink, Johan
Fijten, Rianne
Aerts, Hugo J. W. L.
Dekker, Andre
Wee, Leonard
Distributed radiomics as a signature validation study using the Personal Health Train infrastructure
title Distributed radiomics as a signature validation study using the Personal Health Train infrastructure
title_full Distributed radiomics as a signature validation study using the Personal Health Train infrastructure
title_fullStr Distributed radiomics as a signature validation study using the Personal Health Train infrastructure
title_full_unstemmed Distributed radiomics as a signature validation study using the Personal Health Train infrastructure
title_short Distributed radiomics as a signature validation study using the Personal Health Train infrastructure
title_sort distributed radiomics as a signature validation study using the personal health train infrastructure
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6805885/
https://www.ncbi.nlm.nih.gov/pubmed/31641134
http://dx.doi.org/10.1038/s41597-019-0241-0
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