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Analysis of microarray right-censored data through fused sliced inverse regression
Sufficient dimension reduction (SDR) for a regression pursue a replacement of the original p-dimensional predictors with its lower-dimensional linear projection. The so-called sliced inverse regression (SIR; [5]) arguably has the longest history in SDR methodologies, but it is still one of the most...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2019
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6806006/ https://www.ncbi.nlm.nih.gov/pubmed/31641157 http://dx.doi.org/10.1038/s41598-019-51441-0 |
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author | Yoo, Jae Keun |
author_facet | Yoo, Jae Keun |
author_sort | Yoo, Jae Keun |
collection | PubMed |
description | Sufficient dimension reduction (SDR) for a regression pursue a replacement of the original p-dimensional predictors with its lower-dimensional linear projection. The so-called sliced inverse regression (SIR; [5]) arguably has the longest history in SDR methodologies, but it is still one of the most popular one. The SIR is known to be easily affected by the number of slices, which is one of its critical deficits. Recently, a fused approach for SIR is proposed to relieve this weakness, which fuses the kernel matrices computed by the SIR application from various numbers of slices. In the paper, the fused SIR is applied to a large-p-small n regression of a high-dimensional microarray right-censored data to show its practical advantage over usual SIR application. Through model validation, it is confirmed that the fused SIR outperforms the SIR with any number of slices under consideration. |
format | Online Article Text |
id | pubmed-6806006 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-68060062019-10-24 Analysis of microarray right-censored data through fused sliced inverse regression Yoo, Jae Keun Sci Rep Article Sufficient dimension reduction (SDR) for a regression pursue a replacement of the original p-dimensional predictors with its lower-dimensional linear projection. The so-called sliced inverse regression (SIR; [5]) arguably has the longest history in SDR methodologies, but it is still one of the most popular one. The SIR is known to be easily affected by the number of slices, which is one of its critical deficits. Recently, a fused approach for SIR is proposed to relieve this weakness, which fuses the kernel matrices computed by the SIR application from various numbers of slices. In the paper, the fused SIR is applied to a large-p-small n regression of a high-dimensional microarray right-censored data to show its practical advantage over usual SIR application. Through model validation, it is confirmed that the fused SIR outperforms the SIR with any number of slices under consideration. Nature Publishing Group UK 2019-10-22 /pmc/articles/PMC6806006/ /pubmed/31641157 http://dx.doi.org/10.1038/s41598-019-51441-0 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Yoo, Jae Keun Analysis of microarray right-censored data through fused sliced inverse regression |
title | Analysis of microarray right-censored data through fused sliced inverse regression |
title_full | Analysis of microarray right-censored data through fused sliced inverse regression |
title_fullStr | Analysis of microarray right-censored data through fused sliced inverse regression |
title_full_unstemmed | Analysis of microarray right-censored data through fused sliced inverse regression |
title_short | Analysis of microarray right-censored data through fused sliced inverse regression |
title_sort | analysis of microarray right-censored data through fused sliced inverse regression |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6806006/ https://www.ncbi.nlm.nih.gov/pubmed/31641157 http://dx.doi.org/10.1038/s41598-019-51441-0 |
work_keys_str_mv | AT yoojaekeun analysisofmicroarrayrightcensoreddatathroughfusedslicedinverseregression |