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Nanoparticle Classification Using Frequency Domain Analysis on Resource-Limited Platforms †

A mobile system that can detect viruses in real time is urgently needed, due to the combination of virus emergence and evolution with increasing global travel and transport. A biosensor called PAMONO (for Plasmon Assisted Microscopy of Nano-sized Objects) represents a viable technology for mobile re...

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Autores principales: Yayla, Mikail, Toma, Anas, Chen, Kuan-Hsun, Lenssen, Jan Eric, Shpacovitch, Victoria, Hergenröder, Roland, Weichert, Frank, Chen, Jian-Jia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6806157/
https://www.ncbi.nlm.nih.gov/pubmed/31554304
http://dx.doi.org/10.3390/s19194138
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author Yayla, Mikail
Toma, Anas
Chen, Kuan-Hsun
Lenssen, Jan Eric
Shpacovitch, Victoria
Hergenröder, Roland
Weichert, Frank
Chen, Jian-Jia
author_facet Yayla, Mikail
Toma, Anas
Chen, Kuan-Hsun
Lenssen, Jan Eric
Shpacovitch, Victoria
Hergenröder, Roland
Weichert, Frank
Chen, Jian-Jia
author_sort Yayla, Mikail
collection PubMed
description A mobile system that can detect viruses in real time is urgently needed, due to the combination of virus emergence and evolution with increasing global travel and transport. A biosensor called PAMONO (for Plasmon Assisted Microscopy of Nano-sized Objects) represents a viable technology for mobile real-time detection of viruses and virus-like particles. It could be used for fast and reliable diagnoses in hospitals, airports, the open air, or other settings. For analysis of the images provided by the sensor, state-of-the-art methods based on convolutional neural networks (CNNs) can achieve high accuracy. However, such computationally intensive methods may not be suitable on most mobile systems. In this work, we propose nanoparticle classification approaches based on frequency domain analysis, which are less resource-intensive. We observe that on average the classification takes 29 [Formula: see text] s per image for the Fourier features and 17 [Formula: see text] s for the Haar wavelet features. Although the CNN-based method scores 1–2.5 percentage points higher in classification accuracy, it takes 3370 [Formula: see text] s per image on the same platform. With these results, we identify and explore the trade-off between resource efficiency and classification performance for nanoparticle classification of images provided by the PAMONO sensor.
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spelling pubmed-68061572019-11-07 Nanoparticle Classification Using Frequency Domain Analysis on Resource-Limited Platforms † Yayla, Mikail Toma, Anas Chen, Kuan-Hsun Lenssen, Jan Eric Shpacovitch, Victoria Hergenröder, Roland Weichert, Frank Chen, Jian-Jia Sensors (Basel) Article A mobile system that can detect viruses in real time is urgently needed, due to the combination of virus emergence and evolution with increasing global travel and transport. A biosensor called PAMONO (for Plasmon Assisted Microscopy of Nano-sized Objects) represents a viable technology for mobile real-time detection of viruses and virus-like particles. It could be used for fast and reliable diagnoses in hospitals, airports, the open air, or other settings. For analysis of the images provided by the sensor, state-of-the-art methods based on convolutional neural networks (CNNs) can achieve high accuracy. However, such computationally intensive methods may not be suitable on most mobile systems. In this work, we propose nanoparticle classification approaches based on frequency domain analysis, which are less resource-intensive. We observe that on average the classification takes 29 [Formula: see text] s per image for the Fourier features and 17 [Formula: see text] s for the Haar wavelet features. Although the CNN-based method scores 1–2.5 percentage points higher in classification accuracy, it takes 3370 [Formula: see text] s per image on the same platform. With these results, we identify and explore the trade-off between resource efficiency and classification performance for nanoparticle classification of images provided by the PAMONO sensor. MDPI 2019-09-24 /pmc/articles/PMC6806157/ /pubmed/31554304 http://dx.doi.org/10.3390/s19194138 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Yayla, Mikail
Toma, Anas
Chen, Kuan-Hsun
Lenssen, Jan Eric
Shpacovitch, Victoria
Hergenröder, Roland
Weichert, Frank
Chen, Jian-Jia
Nanoparticle Classification Using Frequency Domain Analysis on Resource-Limited Platforms †
title Nanoparticle Classification Using Frequency Domain Analysis on Resource-Limited Platforms †
title_full Nanoparticle Classification Using Frequency Domain Analysis on Resource-Limited Platforms †
title_fullStr Nanoparticle Classification Using Frequency Domain Analysis on Resource-Limited Platforms †
title_full_unstemmed Nanoparticle Classification Using Frequency Domain Analysis on Resource-Limited Platforms †
title_short Nanoparticle Classification Using Frequency Domain Analysis on Resource-Limited Platforms †
title_sort nanoparticle classification using frequency domain analysis on resource-limited platforms †
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6806157/
https://www.ncbi.nlm.nih.gov/pubmed/31554304
http://dx.doi.org/10.3390/s19194138
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