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Super-Resolution Reconstruction of Cell Pseudo-Color Image Based on Raman Technology

Raman spectroscopy visualization is a challenging task due to the interference of complex background noise and the number of selected measurement points. In this paper, a super-resolution image reconstruction algorithm for Raman spectroscopy is studied to convert raw Raman data into pseudo-color sup...

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Autores principales: Yang, Yifan, Zhu, Ming, Wang, Yuqing, Yang, Hang, Wu, Yanfeng, Li, Bei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6806596/
https://www.ncbi.nlm.nih.gov/pubmed/31547194
http://dx.doi.org/10.3390/s19194076
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author Yang, Yifan
Zhu, Ming
Wang, Yuqing
Yang, Hang
Wu, Yanfeng
Li, Bei
author_facet Yang, Yifan
Zhu, Ming
Wang, Yuqing
Yang, Hang
Wu, Yanfeng
Li, Bei
author_sort Yang, Yifan
collection PubMed
description Raman spectroscopy visualization is a challenging task due to the interference of complex background noise and the number of selected measurement points. In this paper, a super-resolution image reconstruction algorithm for Raman spectroscopy is studied to convert raw Raman data into pseudo-color super-resolution imaging. Firstly, the Raman spectrum data of a single measurement point is measured multiple times to calculate the mean value to remove the random background noise, and innovatively introduce the Retinex algorithm and the median filtering algorithm which improve the signal-to-noise ratio. The novel method of using deep neural network performs a super-resolution reconstruction operation on the gray image. An adaptive guided filter that automatically adjusts the filter radius and penalty factor is proposed to highlight the contour of the cell, and the super-resolution reconstruction of the pseudo-color image of the Raman spectrum is realized. The average signal-to-noise ratio of the reconstructed pseudo-color image sub-band reaches 14.29 db, and the average value of information entropy reaches 4.30 db. The results show that the Raman-based cell pseudo-color image super-resolution reconstruction algorithm is an effective tool to effectively remove noise and high-resolution visualization. The contrast experiments show that the pseudo-color image Kullback–Leiber (KL) entropy of the color image obtained by the method is small, the boundary is obvious, and the noise is small, which provide technical support for the development of sophisticated single-cell imaging Raman spectroscopy instruments.
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spelling pubmed-68065962019-11-07 Super-Resolution Reconstruction of Cell Pseudo-Color Image Based on Raman Technology Yang, Yifan Zhu, Ming Wang, Yuqing Yang, Hang Wu, Yanfeng Li, Bei Sensors (Basel) Article Raman spectroscopy visualization is a challenging task due to the interference of complex background noise and the number of selected measurement points. In this paper, a super-resolution image reconstruction algorithm for Raman spectroscopy is studied to convert raw Raman data into pseudo-color super-resolution imaging. Firstly, the Raman spectrum data of a single measurement point is measured multiple times to calculate the mean value to remove the random background noise, and innovatively introduce the Retinex algorithm and the median filtering algorithm which improve the signal-to-noise ratio. The novel method of using deep neural network performs a super-resolution reconstruction operation on the gray image. An adaptive guided filter that automatically adjusts the filter radius and penalty factor is proposed to highlight the contour of the cell, and the super-resolution reconstruction of the pseudo-color image of the Raman spectrum is realized. The average signal-to-noise ratio of the reconstructed pseudo-color image sub-band reaches 14.29 db, and the average value of information entropy reaches 4.30 db. The results show that the Raman-based cell pseudo-color image super-resolution reconstruction algorithm is an effective tool to effectively remove noise and high-resolution visualization. The contrast experiments show that the pseudo-color image Kullback–Leiber (KL) entropy of the color image obtained by the method is small, the boundary is obvious, and the noise is small, which provide technical support for the development of sophisticated single-cell imaging Raman spectroscopy instruments. MDPI 2019-09-20 /pmc/articles/PMC6806596/ /pubmed/31547194 http://dx.doi.org/10.3390/s19194076 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Yang, Yifan
Zhu, Ming
Wang, Yuqing
Yang, Hang
Wu, Yanfeng
Li, Bei
Super-Resolution Reconstruction of Cell Pseudo-Color Image Based on Raman Technology
title Super-Resolution Reconstruction of Cell Pseudo-Color Image Based on Raman Technology
title_full Super-Resolution Reconstruction of Cell Pseudo-Color Image Based on Raman Technology
title_fullStr Super-Resolution Reconstruction of Cell Pseudo-Color Image Based on Raman Technology
title_full_unstemmed Super-Resolution Reconstruction of Cell Pseudo-Color Image Based on Raman Technology
title_short Super-Resolution Reconstruction of Cell Pseudo-Color Image Based on Raman Technology
title_sort super-resolution reconstruction of cell pseudo-color image based on raman technology
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6806596/
https://www.ncbi.nlm.nih.gov/pubmed/31547194
http://dx.doi.org/10.3390/s19194076
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