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Towards cross-platform interoperability for machine-assisted text annotation

In this paper, we investigate cross-platform interoperability for natural language processing (NLP) and, in particular, annotation of textual resources, with an eye toward identifying the design elements of annotation models and processes that are particularly problematic for, or amenable to, enabli...

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Autores principales: Eckart de Castilho, Richard, Ide, Nancy, Kim, Jin-Dong, Klie, Jan-Christoph, Suderman, Keith
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Korea Genome Organization 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6808624/
https://www.ncbi.nlm.nih.gov/pubmed/31307134
http://dx.doi.org/10.5808/GI.2019.17.2.e19
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author Eckart de Castilho, Richard
Ide, Nancy
Kim, Jin-Dong
Klie, Jan-Christoph
Suderman, Keith
author_facet Eckart de Castilho, Richard
Ide, Nancy
Kim, Jin-Dong
Klie, Jan-Christoph
Suderman, Keith
author_sort Eckart de Castilho, Richard
collection PubMed
description In this paper, we investigate cross-platform interoperability for natural language processing (NLP) and, in particular, annotation of textual resources, with an eye toward identifying the design elements of annotation models and processes that are particularly problematic for, or amenable to, enabling seamless communication across different platforms. The study is conducted in the context of a specific annotation methodology, namely machine-assisted interactive annotation (also known as human-in-the-loop annotation). This methodology requires the ability to freely combine resources from different document repositories, access a wide array of NLP tools that automatically annotate corpora for various linguistic phenomena, and use a sophisticated annotation editor that enables interactive manual annotation coupled with on-the-fly machine learning. We consider three independently developed platforms, each of which utilizes a different model for representing annotations over text, and each of which performs a different role in the process.
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spelling pubmed-68086242019-10-30 Towards cross-platform interoperability for machine-assisted text annotation Eckart de Castilho, Richard Ide, Nancy Kim, Jin-Dong Klie, Jan-Christoph Suderman, Keith Genomics Inform Application Note In this paper, we investigate cross-platform interoperability for natural language processing (NLP) and, in particular, annotation of textual resources, with an eye toward identifying the design elements of annotation models and processes that are particularly problematic for, or amenable to, enabling seamless communication across different platforms. The study is conducted in the context of a specific annotation methodology, namely machine-assisted interactive annotation (also known as human-in-the-loop annotation). This methodology requires the ability to freely combine resources from different document repositories, access a wide array of NLP tools that automatically annotate corpora for various linguistic phenomena, and use a sophisticated annotation editor that enables interactive manual annotation coupled with on-the-fly machine learning. We consider three independently developed platforms, each of which utilizes a different model for representing annotations over text, and each of which performs a different role in the process. Korea Genome Organization 2019-06-26 /pmc/articles/PMC6808624/ /pubmed/31307134 http://dx.doi.org/10.5808/GI.2019.17.2.e19 Text en (c) 2019, Korea Genome Organization (CC) This is an open-access article distributed under the terms of the Creative Commons Attribution license(https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Application Note
Eckart de Castilho, Richard
Ide, Nancy
Kim, Jin-Dong
Klie, Jan-Christoph
Suderman, Keith
Towards cross-platform interoperability for machine-assisted text annotation
title Towards cross-platform interoperability for machine-assisted text annotation
title_full Towards cross-platform interoperability for machine-assisted text annotation
title_fullStr Towards cross-platform interoperability for machine-assisted text annotation
title_full_unstemmed Towards cross-platform interoperability for machine-assisted text annotation
title_short Towards cross-platform interoperability for machine-assisted text annotation
title_sort towards cross-platform interoperability for machine-assisted text annotation
topic Application Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6808624/
https://www.ncbi.nlm.nih.gov/pubmed/31307134
http://dx.doi.org/10.5808/GI.2019.17.2.e19
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