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1721. A Transcriptional Signature of Acute Aspergillus Infection Offers High Diagnostic Accuracy Despite the Presence of Immunosuppression
BACKGROUND: Invasive aspergillosis (IA) is a major cause of critical illness in immunocompromised (IC) patients. However, current fungal testing methods have significant limitations and there is a clear need for new diagnostic options. Disease-specific gene expression patterns in circulating host ce...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6809422/ http://dx.doi.org/10.1093/ofid/ofz360.1584 |
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author | Steinbrink, Julie M Zaas, Aimee K Βncourt-Quiroz, Marisol Modliszewski, Jennifer L Corcoran, David McClain, Micah T |
author_facet | Steinbrink, Julie M Zaas, Aimee K Βncourt-Quiroz, Marisol Modliszewski, Jennifer L Corcoran, David McClain, Micah T |
author_sort | Steinbrink, Julie M |
collection | PubMed |
description | BACKGROUND: Invasive aspergillosis (IA) is a major cause of critical illness in immunocompromised (IC) patients. However, current fungal testing methods have significant limitations and there is a clear need for new diagnostic options. Disease-specific gene expression patterns in circulating host cells show promise as novel diagnostics; however, it is unknown whether such a “signature” exists for IA. Additionally, there is a need for better understanding of the effect of iatrogenic immunosuppression (present in most cases of IA) on such host response-driven biomarkers. METHODS: Male BALB/c mice were separated into an Aspergillus fumigatus inhalational exposure group and a placebo group. These two groups were each subdivided into three additional sets based on immunocompromised status (no immunosuppression, cyclophosphamide, and corticosteroids) for a total of six experimental groups. Mice were sacrificed 4 days post-infection. Whole blood was assayed for transcriptomic responses via microarray. Bayesian techniques were utilized to develop classifiers of IA and leave one out cross-validation was used to estimate predictive probabilities. RESULTS: Aspergillus infection triggers a powerful response in non-IC hosts, with 2996 genes differentially expressed between IA and controls. We generated a 146-gene expression classifier able to discriminate between non-IC mice with IA and uninfected non-IC mice with 100% accuracy. However, the presence of immunosuppressive drugs exhibited a strong confounding effect on the transcriptomic classifier that was derived in the absence of immunosuppression. After controlling for the genomic effects of immunosuppressive drugs, we were able to generate a 187-gene classifier with a sensitivity of 100% and specificity of 97% across all IC states. CONCLUSION: The host transcriptomic response to IA is robust and highly conserved. Pharmacologic perturbation of the host immune response unsurprisingly has powerful effects on gene expression-based classifier performance and must be taken into account when developing novel diagnostics. When appropriately designed, host-derived peripheral blood transcriptomic responses to IA demonstrate the ability to accurately diagnose Aspergillus infection, even in the presence of immunosuppression. DISCLOSURES: All authors: No reported disclosures. |
format | Online Article Text |
id | pubmed-6809422 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-68094222019-10-28 1721. A Transcriptional Signature of Acute Aspergillus Infection Offers High Diagnostic Accuracy Despite the Presence of Immunosuppression Steinbrink, Julie M Zaas, Aimee K Βncourt-Quiroz, Marisol Modliszewski, Jennifer L Corcoran, David McClain, Micah T Open Forum Infect Dis Abstracts BACKGROUND: Invasive aspergillosis (IA) is a major cause of critical illness in immunocompromised (IC) patients. However, current fungal testing methods have significant limitations and there is a clear need for new diagnostic options. Disease-specific gene expression patterns in circulating host cells show promise as novel diagnostics; however, it is unknown whether such a “signature” exists for IA. Additionally, there is a need for better understanding of the effect of iatrogenic immunosuppression (present in most cases of IA) on such host response-driven biomarkers. METHODS: Male BALB/c mice were separated into an Aspergillus fumigatus inhalational exposure group and a placebo group. These two groups were each subdivided into three additional sets based on immunocompromised status (no immunosuppression, cyclophosphamide, and corticosteroids) for a total of six experimental groups. Mice were sacrificed 4 days post-infection. Whole blood was assayed for transcriptomic responses via microarray. Bayesian techniques were utilized to develop classifiers of IA and leave one out cross-validation was used to estimate predictive probabilities. RESULTS: Aspergillus infection triggers a powerful response in non-IC hosts, with 2996 genes differentially expressed between IA and controls. We generated a 146-gene expression classifier able to discriminate between non-IC mice with IA and uninfected non-IC mice with 100% accuracy. However, the presence of immunosuppressive drugs exhibited a strong confounding effect on the transcriptomic classifier that was derived in the absence of immunosuppression. After controlling for the genomic effects of immunosuppressive drugs, we were able to generate a 187-gene classifier with a sensitivity of 100% and specificity of 97% across all IC states. CONCLUSION: The host transcriptomic response to IA is robust and highly conserved. Pharmacologic perturbation of the host immune response unsurprisingly has powerful effects on gene expression-based classifier performance and must be taken into account when developing novel diagnostics. When appropriately designed, host-derived peripheral blood transcriptomic responses to IA demonstrate the ability to accurately diagnose Aspergillus infection, even in the presence of immunosuppression. DISCLOSURES: All authors: No reported disclosures. Oxford University Press 2019-10-23 /pmc/articles/PMC6809422/ http://dx.doi.org/10.1093/ofid/ofz360.1584 Text en © The Author(s) 2019. Published by Oxford University Press on behalf of Infectious Diseases Society of America. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs licence (http://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial reproduction and distribution of the work, in any medium, provided the original work is not altered or transformed in any way, and that the work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Abstracts Steinbrink, Julie M Zaas, Aimee K Βncourt-Quiroz, Marisol Modliszewski, Jennifer L Corcoran, David McClain, Micah T 1721. A Transcriptional Signature of Acute Aspergillus Infection Offers High Diagnostic Accuracy Despite the Presence of Immunosuppression |
title | 1721. A Transcriptional Signature of Acute Aspergillus Infection Offers High Diagnostic Accuracy Despite the Presence of Immunosuppression |
title_full | 1721. A Transcriptional Signature of Acute Aspergillus Infection Offers High Diagnostic Accuracy Despite the Presence of Immunosuppression |
title_fullStr | 1721. A Transcriptional Signature of Acute Aspergillus Infection Offers High Diagnostic Accuracy Despite the Presence of Immunosuppression |
title_full_unstemmed | 1721. A Transcriptional Signature of Acute Aspergillus Infection Offers High Diagnostic Accuracy Despite the Presence of Immunosuppression |
title_short | 1721. A Transcriptional Signature of Acute Aspergillus Infection Offers High Diagnostic Accuracy Despite the Presence of Immunosuppression |
title_sort | 1721. a transcriptional signature of acute aspergillus infection offers high diagnostic accuracy despite the presence of immunosuppression |
topic | Abstracts |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6809422/ http://dx.doi.org/10.1093/ofid/ofz360.1584 |
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