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2457. Data Science for Outbreak Investigation: Identifying Risk Factors, Tracing Contacts, and Eliciting Transmission Pathways in a Vancomycin-Resistant Enterococci (VRE) Outbreak

BACKGROUND: In 2018 we experienced a nosocomial outbreak due to vancomycin-resistant enterococci (VRE) in our hospital network. Our goals were to characterize risk factors for VRE acquisition, elicit potential hot spots of transmission, and delineate an optimized approach to tracing contacts. METHOD...

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Autores principales: Zahnd, Stefan, Hossmann, Theus, Atkinson, Andrew, Herbel, Sabine, Salazar-Vizcaya, Luisa, Dahlweid, Michael, Marschall, Jonas
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6810178/
http://dx.doi.org/10.1093/ofid/ofz360.2135
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author Zahnd, Stefan
Hossmann, Theus
Atkinson, Andrew
Herbel, Sabine
Salazar-Vizcaya, Luisa
Dahlweid, Michael
Marschall, Jonas
author_facet Zahnd, Stefan
Hossmann, Theus
Atkinson, Andrew
Herbel, Sabine
Salazar-Vizcaya, Luisa
Dahlweid, Michael
Marschall, Jonas
author_sort Zahnd, Stefan
collection PubMed
description BACKGROUND: In 2018 we experienced a nosocomial outbreak due to vancomycin-resistant enterococci (VRE) in our hospital network. Our goals were to characterize risk factors for VRE acquisition, elicit potential hot spots of transmission, and delineate an optimized approach to tracing contacts. METHODS: We assembled diverse datasets of variable quality and covering different aspects of care from electronic medical records generated during the outbreak period (1/2018–9/2018). Patients who tested VRE-positive during this period were compared with controls with up to 3 negative screenings. First, we identified risk factors for VRE colonization by means of uni- and multivariate analyses. Next, we elicited transmission pathways by detecting commonalities between VRE cases, and determined whether patients with characteristics and connections similar to VRE cases were missed by our current contact tracing strategy. RESULTS: We compared 221 VRE patients to 33,624 controls. Independent predictors of VRE colonization were ICU admission (OR 4.9, with 95% confidence interval [3.7–6.5], P < 0.001)], number of records in the database (a proxy for severity-of-illness, OR 1.1 [1.1–1.1], P < 0.001), length of hospital stay (OR 2.7 [2.0–3.5], P < 0.001), age (OR 1.3 [1.2–1.4], P < 0.001), and weeks of antibiotics (OR 1.2 [1.1–1.3], P < 0.001). By using complex network analysis, we were able to establish three main pathways by which the 221 VRE cases are connected: healthcare personnel, medical devices, and patient rooms. This multi-dimensional network extends beyond our current contact tracing strategy, which captures inpatients based on geographical proximity (cf. figure). CONCLUSION: In this outbreak investigation based on a large electronic healthcare data collection, we found three main risk factors for being a VRE carrier (ICU admission, length of hospital stay, antibiotic exposure), along with three important links between VRE cases (healthcare personnel, medical devices, patient rooms). Data science is likely to provide a better understanding of outbreaks, but interpretations should take data maturity, the scope of included sources, and potential confounding factors into account. [Image: see text] DISCLOSURES: All authors: No reported disclosures.
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spelling pubmed-68101782019-10-28 2457. Data Science for Outbreak Investigation: Identifying Risk Factors, Tracing Contacts, and Eliciting Transmission Pathways in a Vancomycin-Resistant Enterococci (VRE) Outbreak Zahnd, Stefan Hossmann, Theus Atkinson, Andrew Herbel, Sabine Salazar-Vizcaya, Luisa Dahlweid, Michael Marschall, Jonas Open Forum Infect Dis Abstracts BACKGROUND: In 2018 we experienced a nosocomial outbreak due to vancomycin-resistant enterococci (VRE) in our hospital network. Our goals were to characterize risk factors for VRE acquisition, elicit potential hot spots of transmission, and delineate an optimized approach to tracing contacts. METHODS: We assembled diverse datasets of variable quality and covering different aspects of care from electronic medical records generated during the outbreak period (1/2018–9/2018). Patients who tested VRE-positive during this period were compared with controls with up to 3 negative screenings. First, we identified risk factors for VRE colonization by means of uni- and multivariate analyses. Next, we elicited transmission pathways by detecting commonalities between VRE cases, and determined whether patients with characteristics and connections similar to VRE cases were missed by our current contact tracing strategy. RESULTS: We compared 221 VRE patients to 33,624 controls. Independent predictors of VRE colonization were ICU admission (OR 4.9, with 95% confidence interval [3.7–6.5], P < 0.001)], number of records in the database (a proxy for severity-of-illness, OR 1.1 [1.1–1.1], P < 0.001), length of hospital stay (OR 2.7 [2.0–3.5], P < 0.001), age (OR 1.3 [1.2–1.4], P < 0.001), and weeks of antibiotics (OR 1.2 [1.1–1.3], P < 0.001). By using complex network analysis, we were able to establish three main pathways by which the 221 VRE cases are connected: healthcare personnel, medical devices, and patient rooms. This multi-dimensional network extends beyond our current contact tracing strategy, which captures inpatients based on geographical proximity (cf. figure). CONCLUSION: In this outbreak investigation based on a large electronic healthcare data collection, we found three main risk factors for being a VRE carrier (ICU admission, length of hospital stay, antibiotic exposure), along with three important links between VRE cases (healthcare personnel, medical devices, patient rooms). Data science is likely to provide a better understanding of outbreaks, but interpretations should take data maturity, the scope of included sources, and potential confounding factors into account. [Image: see text] DISCLOSURES: All authors: No reported disclosures. Oxford University Press 2019-10-23 /pmc/articles/PMC6810178/ http://dx.doi.org/10.1093/ofid/ofz360.2135 Text en © The Author(s) 2019. Published by Oxford University Press on behalf of Infectious Diseases Society of America. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs licence (http://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial reproduction and distribution of the work, in any medium, provided the original work is not altered or transformed in any way, and that the work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Abstracts
Zahnd, Stefan
Hossmann, Theus
Atkinson, Andrew
Herbel, Sabine
Salazar-Vizcaya, Luisa
Dahlweid, Michael
Marschall, Jonas
2457. Data Science for Outbreak Investigation: Identifying Risk Factors, Tracing Contacts, and Eliciting Transmission Pathways in a Vancomycin-Resistant Enterococci (VRE) Outbreak
title 2457. Data Science for Outbreak Investigation: Identifying Risk Factors, Tracing Contacts, and Eliciting Transmission Pathways in a Vancomycin-Resistant Enterococci (VRE) Outbreak
title_full 2457. Data Science for Outbreak Investigation: Identifying Risk Factors, Tracing Contacts, and Eliciting Transmission Pathways in a Vancomycin-Resistant Enterococci (VRE) Outbreak
title_fullStr 2457. Data Science for Outbreak Investigation: Identifying Risk Factors, Tracing Contacts, and Eliciting Transmission Pathways in a Vancomycin-Resistant Enterococci (VRE) Outbreak
title_full_unstemmed 2457. Data Science for Outbreak Investigation: Identifying Risk Factors, Tracing Contacts, and Eliciting Transmission Pathways in a Vancomycin-Resistant Enterococci (VRE) Outbreak
title_short 2457. Data Science for Outbreak Investigation: Identifying Risk Factors, Tracing Contacts, and Eliciting Transmission Pathways in a Vancomycin-Resistant Enterococci (VRE) Outbreak
title_sort 2457. data science for outbreak investigation: identifying risk factors, tracing contacts, and eliciting transmission pathways in a vancomycin-resistant enterococci (vre) outbreak
topic Abstracts
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6810178/
http://dx.doi.org/10.1093/ofid/ofz360.2135
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