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655. Detection of Antibiotic Resistance Genes in Clinical Samples using T2 Magnetic Resonance
BACKGROUND: Antibiotic-resistant bacteria are spread through selective pressure from the use of broad-spectrum empirical therapies, mobile genetic elements that pass resistance genes between species, and the inability to rapidly and appropriately respond to their presence. Resistance gene identifica...
Autores principales: | , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6810963/ http://dx.doi.org/10.1093/ofid/ofz360.723 |
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author | Snyder, Jessica L Manning, Brendan Shivers, Robert Gamero, Daniel Giese, Heidi Phung, Nu Chang, Benjamin Lapp, Heather Paggi, Riccardo Posteraro, Brunella Sanguinetti, Maurizio De Angelis, Giulia Mencacci, Antonella Lowery, Thomas J |
author_facet | Snyder, Jessica L Manning, Brendan Shivers, Robert Gamero, Daniel Giese, Heidi Phung, Nu Chang, Benjamin Lapp, Heather Paggi, Riccardo Posteraro, Brunella Sanguinetti, Maurizio De Angelis, Giulia Mencacci, Antonella Lowery, Thomas J |
author_sort | Snyder, Jessica L |
collection | PubMed |
description | BACKGROUND: Antibiotic-resistant bacteria are spread through selective pressure from the use of broad-spectrum empirical therapies, mobile genetic elements that pass resistance genes between species, and the inability to rapidly and appropriately respond to their presence. Resistance gene identification is often performed with post culture molecular diagnostic tests. The T2Resistance Panel, which detects methicillin resistance genes mecA/C; vancomycin resistance genes vanA/B; carbapenemases bla(KPC), bla(OXA-48),bla(NDM), bla(VIM), and bla(IMP); AmpC β-lactamases bla(CMY) and bla(DHA); and extended-spectrum β-lactamases bla(CTX-M) directly from patient blood samples, is based on T2 magnetic resonance (T2MR), an FDA-cleared technology with demonstrated high sensitivity and specificity for culture-independent bacterial and fungal species identification. Here we report the clinical performance of T2MR detection of resistance genes directly from patient blood samples. METHODS: Patients with a clinical diagnosis of sepsis and an order for blood culture (BC) were enrolled in the study at two sites. BCs were managed using standard procedures and MALDI-TOF for species identification. Resistance testing with the T2MR assay was performed on a direct patient draw and compared with diagnostic test results from concurrent BC specimen and BC specimen taken at other points in time. The potential impact on therapy was evaluated through patient chart review. RESULTS: T2MR detected the same resistance genes as detected by post culture diagnostics in 100% of samples from concurrent blood draws. Discordant results occurred when T2MR was taken ≥48 hours after BC for patients on antimicrobial therapy. The average time to positive result was 5.9 hours with T2MR vs. 30.6 hours with post-culture molecular testing. CONCLUSION: The T2Resistance Panel detected antibiotic resistance genes in clinical samples and displayed agreement with post culture genetic testing. T2MR results were achieved faster than culture-dependent diagnostic testing results and may allow for an earlier change from empiric to directed therapy. The use of culture-independent diagnostics like T2MR could enable a quicker response to antibiotic-resistant organisms for individual patients and developing outbreaks. DISCLOSURES: All authors: No reported disclosures. |
format | Online Article Text |
id | pubmed-6810963 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-68109632019-10-28 655. Detection of Antibiotic Resistance Genes in Clinical Samples using T2 Magnetic Resonance Snyder, Jessica L Manning, Brendan Shivers, Robert Gamero, Daniel Giese, Heidi Phung, Nu Chang, Benjamin Lapp, Heather Paggi, Riccardo Posteraro, Brunella Sanguinetti, Maurizio De Angelis, Giulia Mencacci, Antonella Lowery, Thomas J Open Forum Infect Dis Abstracts BACKGROUND: Antibiotic-resistant bacteria are spread through selective pressure from the use of broad-spectrum empirical therapies, mobile genetic elements that pass resistance genes between species, and the inability to rapidly and appropriately respond to their presence. Resistance gene identification is often performed with post culture molecular diagnostic tests. The T2Resistance Panel, which detects methicillin resistance genes mecA/C; vancomycin resistance genes vanA/B; carbapenemases bla(KPC), bla(OXA-48),bla(NDM), bla(VIM), and bla(IMP); AmpC β-lactamases bla(CMY) and bla(DHA); and extended-spectrum β-lactamases bla(CTX-M) directly from patient blood samples, is based on T2 magnetic resonance (T2MR), an FDA-cleared technology with demonstrated high sensitivity and specificity for culture-independent bacterial and fungal species identification. Here we report the clinical performance of T2MR detection of resistance genes directly from patient blood samples. METHODS: Patients with a clinical diagnosis of sepsis and an order for blood culture (BC) were enrolled in the study at two sites. BCs were managed using standard procedures and MALDI-TOF for species identification. Resistance testing with the T2MR assay was performed on a direct patient draw and compared with diagnostic test results from concurrent BC specimen and BC specimen taken at other points in time. The potential impact on therapy was evaluated through patient chart review. RESULTS: T2MR detected the same resistance genes as detected by post culture diagnostics in 100% of samples from concurrent blood draws. Discordant results occurred when T2MR was taken ≥48 hours after BC for patients on antimicrobial therapy. The average time to positive result was 5.9 hours with T2MR vs. 30.6 hours with post-culture molecular testing. CONCLUSION: The T2Resistance Panel detected antibiotic resistance genes in clinical samples and displayed agreement with post culture genetic testing. T2MR results were achieved faster than culture-dependent diagnostic testing results and may allow for an earlier change from empiric to directed therapy. The use of culture-independent diagnostics like T2MR could enable a quicker response to antibiotic-resistant organisms for individual patients and developing outbreaks. DISCLOSURES: All authors: No reported disclosures. Oxford University Press 2019-10-23 /pmc/articles/PMC6810963/ http://dx.doi.org/10.1093/ofid/ofz360.723 Text en © The Author(s) 2019. Published by Oxford University Press on behalf of Infectious Diseases Society of America. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs licence (http://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial reproduction and distribution of the work, in any medium, provided the original work is not altered or transformed in any way, and that the work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Abstracts Snyder, Jessica L Manning, Brendan Shivers, Robert Gamero, Daniel Giese, Heidi Phung, Nu Chang, Benjamin Lapp, Heather Paggi, Riccardo Posteraro, Brunella Sanguinetti, Maurizio De Angelis, Giulia Mencacci, Antonella Lowery, Thomas J 655. Detection of Antibiotic Resistance Genes in Clinical Samples using T2 Magnetic Resonance |
title | 655. Detection of Antibiotic Resistance Genes in Clinical Samples using T2 Magnetic Resonance |
title_full | 655. Detection of Antibiotic Resistance Genes in Clinical Samples using T2 Magnetic Resonance |
title_fullStr | 655. Detection of Antibiotic Resistance Genes in Clinical Samples using T2 Magnetic Resonance |
title_full_unstemmed | 655. Detection of Antibiotic Resistance Genes in Clinical Samples using T2 Magnetic Resonance |
title_short | 655. Detection of Antibiotic Resistance Genes in Clinical Samples using T2 Magnetic Resonance |
title_sort | 655. detection of antibiotic resistance genes in clinical samples using t2 magnetic resonance |
topic | Abstracts |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6810963/ http://dx.doi.org/10.1093/ofid/ofz360.723 |
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