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625. Genomic Epidemiology of Carbapenem-Resistant Enterobacteriaceae from Colombia: A Prospective Multicenter Study
BACKGROUND: Carbapenem-resistant Enterobacteriaceae (CRE) is a serious public health threat. A major epidemic of carbapenemase-producing Klebsiella pneumoniae has occurred in Colombia through complex mechanisms of bla(KPC) dissemination. In the framework of a prospective, observational cohort study...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6811030/ http://dx.doi.org/10.1093/ofid/ofz360.693 |
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author | Reyes, Jinnethe Diaz, Lorena Carvajal, Lina P Rios, Rafael Millan, Lina V Echeverri, Aura M Hernandez, Angie K Vargas, Sandra Salcedo, Soraya Marin, Adriana Mora, Laura Ordonez Diaz, Karen M Cristancho Quintero, Edilberto Valderrama, Sandra Elena Ariza, Beatriz Cortes, Gloria Rojas, Laura J Chambers, Henry F Fowler, Vance G Kreiswirth, Barry Virginia Villegas, Maria Bonomo, Robert A Hanson, Blake van Duin, David Arias, Cesar A |
author_facet | Reyes, Jinnethe Diaz, Lorena Carvajal, Lina P Rios, Rafael Millan, Lina V Echeverri, Aura M Hernandez, Angie K Vargas, Sandra Salcedo, Soraya Marin, Adriana Mora, Laura Ordonez Diaz, Karen M Cristancho Quintero, Edilberto Valderrama, Sandra Elena Ariza, Beatriz Cortes, Gloria Rojas, Laura J Chambers, Henry F Fowler, Vance G Kreiswirth, Barry Virginia Villegas, Maria Bonomo, Robert A Hanson, Blake van Duin, David Arias, Cesar A |
author_sort | Reyes, Jinnethe |
collection | PubMed |
description | BACKGROUND: Carbapenem-resistant Enterobacteriaceae (CRE) is a serious public health threat. A major epidemic of carbapenemase-producing Klebsiella pneumoniae has occurred in Colombia through complex mechanisms of bla(KPC) dissemination. In the framework of a prospective, observational cohort study (CRACKLE-2), we aimed to characterize the genomic epidemiology of CRE circulating in Colombia. METHODS: We performed whole-genome sequencing of 52 isolates collected from the same number of patients (July 2017–April 2018) in 5 Colombian hospitals. Species confirmation and sequence type were determined using Strain Seeker and MLST database. Resistance genes were detected using ResFinder and CARD databases. Phylogenetic reconstruction included additional 108 isolates of carbapenem-resistant K. pneumoniae from a previous study. RESULTS: K. pneumoniae (36%), Escherichia coli (17%), and Enterobacter cloacae complex(17%) were the most frequent species. Genes conferring resistance to carbapenems were detected in 93% of isolates. bla(KPC-2/3,)bla(NDM-1) andbla(VIM-2/24) were identified in 81%, 15%, and 5% of isolates, respectively. Phylogenetic reconstructions of K. pneumoniae showed that clonal group 258 (CG258) were the predominant genetic lineage (Figure 1). Among CG258, ST11 was the most common comprising ca. 26% of isolates. Of note, ST11 had been extremely rare in previous surveillance studies in Colombia. The non-CG258 were from 9 different STs and exhibited high genomic diversity. Among E. coli isolates 33% belonged to the high-risk clone ST131 harboring bla(KPC-2) and we detected both bla(KPC-2) and bla(VIM-24) in 1 E. coli ST131 isolate. ST510 E. cloacae complex harboring bla(KPC-2) was the most common (44%) lineage. CONCLUSION: K. pneumoniae and E. coli are the most frequent CRE isolated from patients in Colombian hospitals. Dissemination of bla(KPC) through horizontal gene transfer to several species of Enterobacteriaceae continues to be a common mechanism of spread. Although KPC continues to be the most common carbapenemase, a rise in high-risk clonal lineages harboring metallo-carbapenemases, in particular NDM-1 is worrisome. Our results indicate emergence of virulent genetic lineages of K. pneumoniae ST11 and E. coli ST131 carrying carbapenemases in Colombia. [Image: see text] DISCLOSURES: All authors: No reported disclosures. |
format | Online Article Text |
id | pubmed-6811030 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-68110302019-10-28 625. Genomic Epidemiology of Carbapenem-Resistant Enterobacteriaceae from Colombia: A Prospective Multicenter Study Reyes, Jinnethe Diaz, Lorena Carvajal, Lina P Rios, Rafael Millan, Lina V Echeverri, Aura M Hernandez, Angie K Vargas, Sandra Salcedo, Soraya Marin, Adriana Mora, Laura Ordonez Diaz, Karen M Cristancho Quintero, Edilberto Valderrama, Sandra Elena Ariza, Beatriz Cortes, Gloria Rojas, Laura J Chambers, Henry F Fowler, Vance G Kreiswirth, Barry Virginia Villegas, Maria Bonomo, Robert A Hanson, Blake van Duin, David Arias, Cesar A Open Forum Infect Dis Abstracts BACKGROUND: Carbapenem-resistant Enterobacteriaceae (CRE) is a serious public health threat. A major epidemic of carbapenemase-producing Klebsiella pneumoniae has occurred in Colombia through complex mechanisms of bla(KPC) dissemination. In the framework of a prospective, observational cohort study (CRACKLE-2), we aimed to characterize the genomic epidemiology of CRE circulating in Colombia. METHODS: We performed whole-genome sequencing of 52 isolates collected from the same number of patients (July 2017–April 2018) in 5 Colombian hospitals. Species confirmation and sequence type were determined using Strain Seeker and MLST database. Resistance genes were detected using ResFinder and CARD databases. Phylogenetic reconstruction included additional 108 isolates of carbapenem-resistant K. pneumoniae from a previous study. RESULTS: K. pneumoniae (36%), Escherichia coli (17%), and Enterobacter cloacae complex(17%) were the most frequent species. Genes conferring resistance to carbapenems were detected in 93% of isolates. bla(KPC-2/3,)bla(NDM-1) andbla(VIM-2/24) were identified in 81%, 15%, and 5% of isolates, respectively. Phylogenetic reconstructions of K. pneumoniae showed that clonal group 258 (CG258) were the predominant genetic lineage (Figure 1). Among CG258, ST11 was the most common comprising ca. 26% of isolates. Of note, ST11 had been extremely rare in previous surveillance studies in Colombia. The non-CG258 were from 9 different STs and exhibited high genomic diversity. Among E. coli isolates 33% belonged to the high-risk clone ST131 harboring bla(KPC-2) and we detected both bla(KPC-2) and bla(VIM-24) in 1 E. coli ST131 isolate. ST510 E. cloacae complex harboring bla(KPC-2) was the most common (44%) lineage. CONCLUSION: K. pneumoniae and E. coli are the most frequent CRE isolated from patients in Colombian hospitals. Dissemination of bla(KPC) through horizontal gene transfer to several species of Enterobacteriaceae continues to be a common mechanism of spread. Although KPC continues to be the most common carbapenemase, a rise in high-risk clonal lineages harboring metallo-carbapenemases, in particular NDM-1 is worrisome. Our results indicate emergence of virulent genetic lineages of K. pneumoniae ST11 and E. coli ST131 carrying carbapenemases in Colombia. [Image: see text] DISCLOSURES: All authors: No reported disclosures. Oxford University Press 2019-10-23 /pmc/articles/PMC6811030/ http://dx.doi.org/10.1093/ofid/ofz360.693 Text en © The Author(s) 2019. Published by Oxford University Press on behalf of Infectious Diseases Society of America. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs licence (http://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial reproduction and distribution of the work, in any medium, provided the original work is not altered or transformed in any way, and that the work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Abstracts Reyes, Jinnethe Diaz, Lorena Carvajal, Lina P Rios, Rafael Millan, Lina V Echeverri, Aura M Hernandez, Angie K Vargas, Sandra Salcedo, Soraya Marin, Adriana Mora, Laura Ordonez Diaz, Karen M Cristancho Quintero, Edilberto Valderrama, Sandra Elena Ariza, Beatriz Cortes, Gloria Rojas, Laura J Chambers, Henry F Fowler, Vance G Kreiswirth, Barry Virginia Villegas, Maria Bonomo, Robert A Hanson, Blake van Duin, David Arias, Cesar A 625. Genomic Epidemiology of Carbapenem-Resistant Enterobacteriaceae from Colombia: A Prospective Multicenter Study |
title | 625. Genomic Epidemiology of Carbapenem-Resistant Enterobacteriaceae from Colombia: A Prospective Multicenter Study |
title_full | 625. Genomic Epidemiology of Carbapenem-Resistant Enterobacteriaceae from Colombia: A Prospective Multicenter Study |
title_fullStr | 625. Genomic Epidemiology of Carbapenem-Resistant Enterobacteriaceae from Colombia: A Prospective Multicenter Study |
title_full_unstemmed | 625. Genomic Epidemiology of Carbapenem-Resistant Enterobacteriaceae from Colombia: A Prospective Multicenter Study |
title_short | 625. Genomic Epidemiology of Carbapenem-Resistant Enterobacteriaceae from Colombia: A Prospective Multicenter Study |
title_sort | 625. genomic epidemiology of carbapenem-resistant enterobacteriaceae from colombia: a prospective multicenter study |
topic | Abstracts |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6811030/ http://dx.doi.org/10.1093/ofid/ofz360.693 |
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