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560. Relating Whole-Genome Sequencing of Methicillin-Resistant Staphylococcus aureus Isolates to Transmission Dynamics and Efficacy of Control Interventions

BACKGROUND: Methicillin-resistant staphylococcus aureus (MRSA) colonization of hospitalized patients is associated with higher readmission rates and increased morbidity. Depending on the mechanisms of transmission, numerous potential control interventions exist to reduce the burden of disease. Howev...

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Autores principales: Blumberg, Seth, Porco, Travis, Shopsin, Bo, Phillips, Michael
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6811193/
http://dx.doi.org/10.1093/ofid/ofz360.629
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author Blumberg, Seth
Porco, Travis
Shopsin, Bo
Phillips, Michael
author_facet Blumberg, Seth
Porco, Travis
Shopsin, Bo
Phillips, Michael
author_sort Blumberg, Seth
collection PubMed
description BACKGROUND: Methicillin-resistant staphylococcus aureus (MRSA) colonization of hospitalized patients is associated with higher readmission rates and increased morbidity. Depending on the mechanisms of transmission, numerous potential control interventions exist to reduce the burden of disease. However, given the preponderance of asymptomatic colonization, it is challenging to quantify the relative importance of different transmission mechanisms and assess control efficacy. By identifying clusters of transmission, whole-genome sequencing (WGS) provides an opportunity to overcome these challenges. METHODS: We sought to apply cluster analysis techniques to WGS data for MRSA, in order to assess MRSA prevalence, transmissibility, the degree of transmission heterogeneity and the potential effectiveness of control. Our model builds upon previous work that showed a direct relationship between the size distribution of infection clusters, the effective reproduction number (R) and the dispersion parameter (k). To demonstrate its functionality, our model was applied to existing WGS data for MRSA isolates collected during a 12 month period in the East of England (DOI: 10.1126/scitranslmed.aak9745) RESULTS: The effective reproduction number for the East of England data is 0.29 (95% CI: 0.24–0.36). The dispersion parameter is 0.09 (0.03–0.33) reflecting a high degree of transmission heterogeneity. This implies all transmission is caused by just 12% of the cases. Targeted control of these cases could have decreased overall burden of MRSA colonization by 29% during the time period of the study. CONCLUSION: The high degree of transmission heterogeneity seen in MRSA transmission suggests that the risk for infection is variable.This observation motivates the need for more detailed mechanistic modeling of hospital-based MRSA transmission that integrates patients-specific factors, movement data and genome sequencing. Such models could be used to forecast which patients are at greatest risk for either acquiring or transmitting MRSA, thereby improving targeted control. DISCLOSURES: All authors: No reported disclosures.
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spelling pubmed-68111932019-10-29 560. Relating Whole-Genome Sequencing of Methicillin-Resistant Staphylococcus aureus Isolates to Transmission Dynamics and Efficacy of Control Interventions Blumberg, Seth Porco, Travis Shopsin, Bo Phillips, Michael Open Forum Infect Dis Abstracts BACKGROUND: Methicillin-resistant staphylococcus aureus (MRSA) colonization of hospitalized patients is associated with higher readmission rates and increased morbidity. Depending on the mechanisms of transmission, numerous potential control interventions exist to reduce the burden of disease. However, given the preponderance of asymptomatic colonization, it is challenging to quantify the relative importance of different transmission mechanisms and assess control efficacy. By identifying clusters of transmission, whole-genome sequencing (WGS) provides an opportunity to overcome these challenges. METHODS: We sought to apply cluster analysis techniques to WGS data for MRSA, in order to assess MRSA prevalence, transmissibility, the degree of transmission heterogeneity and the potential effectiveness of control. Our model builds upon previous work that showed a direct relationship between the size distribution of infection clusters, the effective reproduction number (R) and the dispersion parameter (k). To demonstrate its functionality, our model was applied to existing WGS data for MRSA isolates collected during a 12 month period in the East of England (DOI: 10.1126/scitranslmed.aak9745) RESULTS: The effective reproduction number for the East of England data is 0.29 (95% CI: 0.24–0.36). The dispersion parameter is 0.09 (0.03–0.33) reflecting a high degree of transmission heterogeneity. This implies all transmission is caused by just 12% of the cases. Targeted control of these cases could have decreased overall burden of MRSA colonization by 29% during the time period of the study. CONCLUSION: The high degree of transmission heterogeneity seen in MRSA transmission suggests that the risk for infection is variable.This observation motivates the need for more detailed mechanistic modeling of hospital-based MRSA transmission that integrates patients-specific factors, movement data and genome sequencing. Such models could be used to forecast which patients are at greatest risk for either acquiring or transmitting MRSA, thereby improving targeted control. DISCLOSURES: All authors: No reported disclosures. Oxford University Press 2019-10-23 /pmc/articles/PMC6811193/ http://dx.doi.org/10.1093/ofid/ofz360.629 Text en © The Author(s) 2019. Published by Oxford University Press on behalf of Infectious Diseases Society of America. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs licence (http://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial reproduction and distribution of the work, in any medium, provided the original work is not altered or transformed in any way, and that the work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Abstracts
Blumberg, Seth
Porco, Travis
Shopsin, Bo
Phillips, Michael
560. Relating Whole-Genome Sequencing of Methicillin-Resistant Staphylococcus aureus Isolates to Transmission Dynamics and Efficacy of Control Interventions
title 560. Relating Whole-Genome Sequencing of Methicillin-Resistant Staphylococcus aureus Isolates to Transmission Dynamics and Efficacy of Control Interventions
title_full 560. Relating Whole-Genome Sequencing of Methicillin-Resistant Staphylococcus aureus Isolates to Transmission Dynamics and Efficacy of Control Interventions
title_fullStr 560. Relating Whole-Genome Sequencing of Methicillin-Resistant Staphylococcus aureus Isolates to Transmission Dynamics and Efficacy of Control Interventions
title_full_unstemmed 560. Relating Whole-Genome Sequencing of Methicillin-Resistant Staphylococcus aureus Isolates to Transmission Dynamics and Efficacy of Control Interventions
title_short 560. Relating Whole-Genome Sequencing of Methicillin-Resistant Staphylococcus aureus Isolates to Transmission Dynamics and Efficacy of Control Interventions
title_sort 560. relating whole-genome sequencing of methicillin-resistant staphylococcus aureus isolates to transmission dynamics and efficacy of control interventions
topic Abstracts
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6811193/
http://dx.doi.org/10.1093/ofid/ofz360.629
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