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630. Clinical and Molecular Characteristics of Carbapenem-Resistant Enterobacteriaceae in Qatar: A Retrospective and Prospective Observational Study

BACKGROUND: There are limited data describing carbapenem-resistant Enterobacteriaceae (CRE) from the Arabian Gulf region. Our aims were to describe the clinical, microbiological and molecular characteristics of CRE infections and to characterize the gene displaying resistance to carbapenem. METHODS:...

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Autores principales: Ben Abid, Fatma, Doi, Yohei, Omrani, Ali S, Deshmukh, Anand, McElheny, Christi L, Bachman, William C, Erin Louise, Fowler, Ming Tsui, Kin, Almaslamani, Muna, Al Khal, Abdullatif, A Al Bishawi, Ahmad A, Mushtaq, Kamran, Mahmoud Mohamed Hamed, Manal, Butt, Adeel A
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6811196/
http://dx.doi.org/10.1093/ofid/ofz360.698
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author Ben Abid, Fatma
Doi, Yohei
Omrani, Ali S
Deshmukh, Anand
McElheny, Christi L
Bachman, William C
Erin Louise, Fowler
Ming Tsui, Kin
Almaslamani, Muna
Al Khal, Abdullatif
A Al Bishawi, Ahmad A
Mushtaq, Kamran
Mahmoud Mohamed Hamed, Manal
Butt, Adeel A
author_facet Ben Abid, Fatma
Doi, Yohei
Omrani, Ali S
Deshmukh, Anand
McElheny, Christi L
Bachman, William C
Erin Louise, Fowler
Ming Tsui, Kin
Almaslamani, Muna
Al Khal, Abdullatif
A Al Bishawi, Ahmad A
Mushtaq, Kamran
Mahmoud Mohamed Hamed, Manal
Butt, Adeel A
author_sort Ben Abid, Fatma
collection PubMed
description BACKGROUND: There are limited data describing carbapenem-resistant Enterobacteriaceae (CRE) from the Arabian Gulf region. Our aims were to describe the clinical, microbiological and molecular characteristics of CRE infections and to characterize the gene displaying resistance to carbapenem. METHODS: Retrospective and prospective review of clinical, microbiological and molecular characteristics of CRE isolated between April 2015 and November 2017 at 7 tertiary hospitals in Qatar. Susceptibility testing was performed and interpreted according to Clinical Laboratory Standards Institute methodology and breakpoints. Carbapenemase genes were identified using PCR. Whole-genome sequencing followed by bioinformatics analysis was performed on a subset of samples for accurate detection of resistant genes. SPSS V.21.0 was used for all statistical analyses. RESULTS: A total of 144 nonrepeating CRE strains were recovered from 137 individuals over the study period, of which 35 (24.3%) represented colonization. Klebsiella spp. (98, 68.1%) and E. coli (38, 26.4%) were the most predominant. The most prevalent carbapenemases were NDM (69, 47.9%), OXA-48 (36, 25.0%), and KPC (15, 10.4%). Sixteen (11.1%) strains possessed multiple carbapenemase genes but none were detected in 37 (25.7%) strains. Genomic analysis also detected the presence of NDM-7, NDM-5, NDM1, VIM4, and OXA48-like carbapenemase genes among 34 clinical samples. The majority of the strains were susceptible to tigecycline (124, 86.1%), fosfomycin (122, 84.7%) and amikacin (102, 70.8%). There were 109 CRE infections involving the urinary tract (40, 36.7%), bloodstream (31, 28.4%), and respiratory tract (17, 15.6%). Fifty-seven (52.3%) were males and the median age was 57 years (range 3–97). Baseline comorbidities included diabetes (57, 52.3%), chronic kidney disease (27, 24.8%), and cancer (27, 24.8%) (Table 1). Within the 30 days preceding CRE infection, 38 (34.9%) had received carbapenem therapy, 65 (59.6%) had undergone invasive procedures and 33 (30.3%) had had surgery. All-cause 30-day mortality was 29.4%. The only variable independently associated with mortality was baseline SAPS Score (Table 2). CONCLUSION: NDM and OXA-48 are the predominant carbapenemases in Qatar. CRE infections are associated with high overall mortality. [Image: see text] [Image: see text] DISCLOSURES: All authors: No reported disclosures.
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spelling pubmed-68111962019-10-29 630. Clinical and Molecular Characteristics of Carbapenem-Resistant Enterobacteriaceae in Qatar: A Retrospective and Prospective Observational Study Ben Abid, Fatma Doi, Yohei Omrani, Ali S Deshmukh, Anand McElheny, Christi L Bachman, William C Erin Louise, Fowler Ming Tsui, Kin Almaslamani, Muna Al Khal, Abdullatif A Al Bishawi, Ahmad A Mushtaq, Kamran Mahmoud Mohamed Hamed, Manal Butt, Adeel A Open Forum Infect Dis Abstracts BACKGROUND: There are limited data describing carbapenem-resistant Enterobacteriaceae (CRE) from the Arabian Gulf region. Our aims were to describe the clinical, microbiological and molecular characteristics of CRE infections and to characterize the gene displaying resistance to carbapenem. METHODS: Retrospective and prospective review of clinical, microbiological and molecular characteristics of CRE isolated between April 2015 and November 2017 at 7 tertiary hospitals in Qatar. Susceptibility testing was performed and interpreted according to Clinical Laboratory Standards Institute methodology and breakpoints. Carbapenemase genes were identified using PCR. Whole-genome sequencing followed by bioinformatics analysis was performed on a subset of samples for accurate detection of resistant genes. SPSS V.21.0 was used for all statistical analyses. RESULTS: A total of 144 nonrepeating CRE strains were recovered from 137 individuals over the study period, of which 35 (24.3%) represented colonization. Klebsiella spp. (98, 68.1%) and E. coli (38, 26.4%) were the most predominant. The most prevalent carbapenemases were NDM (69, 47.9%), OXA-48 (36, 25.0%), and KPC (15, 10.4%). Sixteen (11.1%) strains possessed multiple carbapenemase genes but none were detected in 37 (25.7%) strains. Genomic analysis also detected the presence of NDM-7, NDM-5, NDM1, VIM4, and OXA48-like carbapenemase genes among 34 clinical samples. The majority of the strains were susceptible to tigecycline (124, 86.1%), fosfomycin (122, 84.7%) and amikacin (102, 70.8%). There were 109 CRE infections involving the urinary tract (40, 36.7%), bloodstream (31, 28.4%), and respiratory tract (17, 15.6%). Fifty-seven (52.3%) were males and the median age was 57 years (range 3–97). Baseline comorbidities included diabetes (57, 52.3%), chronic kidney disease (27, 24.8%), and cancer (27, 24.8%) (Table 1). Within the 30 days preceding CRE infection, 38 (34.9%) had received carbapenem therapy, 65 (59.6%) had undergone invasive procedures and 33 (30.3%) had had surgery. All-cause 30-day mortality was 29.4%. The only variable independently associated with mortality was baseline SAPS Score (Table 2). CONCLUSION: NDM and OXA-48 are the predominant carbapenemases in Qatar. CRE infections are associated with high overall mortality. [Image: see text] [Image: see text] DISCLOSURES: All authors: No reported disclosures. Oxford University Press 2019-10-23 /pmc/articles/PMC6811196/ http://dx.doi.org/10.1093/ofid/ofz360.698 Text en © The Author(s) 2019. Published by Oxford University Press on behalf of Infectious Diseases Society of America. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs licence (http://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial reproduction and distribution of the work, in any medium, provided the original work is not altered or transformed in any way, and that the work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Abstracts
Ben Abid, Fatma
Doi, Yohei
Omrani, Ali S
Deshmukh, Anand
McElheny, Christi L
Bachman, William C
Erin Louise, Fowler
Ming Tsui, Kin
Almaslamani, Muna
Al Khal, Abdullatif
A Al Bishawi, Ahmad A
Mushtaq, Kamran
Mahmoud Mohamed Hamed, Manal
Butt, Adeel A
630. Clinical and Molecular Characteristics of Carbapenem-Resistant Enterobacteriaceae in Qatar: A Retrospective and Prospective Observational Study
title 630. Clinical and Molecular Characteristics of Carbapenem-Resistant Enterobacteriaceae in Qatar: A Retrospective and Prospective Observational Study
title_full 630. Clinical and Molecular Characteristics of Carbapenem-Resistant Enterobacteriaceae in Qatar: A Retrospective and Prospective Observational Study
title_fullStr 630. Clinical and Molecular Characteristics of Carbapenem-Resistant Enterobacteriaceae in Qatar: A Retrospective and Prospective Observational Study
title_full_unstemmed 630. Clinical and Molecular Characteristics of Carbapenem-Resistant Enterobacteriaceae in Qatar: A Retrospective and Prospective Observational Study
title_short 630. Clinical and Molecular Characteristics of Carbapenem-Resistant Enterobacteriaceae in Qatar: A Retrospective and Prospective Observational Study
title_sort 630. clinical and molecular characteristics of carbapenem-resistant enterobacteriaceae in qatar: a retrospective and prospective observational study
topic Abstracts
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6811196/
http://dx.doi.org/10.1093/ofid/ofz360.698
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