Cargando…

606. Identification and Characterization of HMB-2, a Novel Metallo-β-Lactamase in a Pseudomonas aeruginosa Isolate

BACKGROUND: Carbapenemases, a global health threat, are a diverse group of β-lactamases active against cephalosporins and carbapenems, which are often last resort treatments for multidrug-resistant gram-negative infections. The most common carbapenemases reported among Pseudomonas aeruginosa are met...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhu, Wenming, McAllister, Gillian A, Jose Machado, Maria, Campbell, Davina, Karlsson, Maria, Rasheed, James, Kainer, Marion A, Muleta, Daniel, Walters, Maroya S, Grass, Julian E, Halpin, Alison L, Stanton, Richard A
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6811285/
http://dx.doi.org/10.1093/ofid/ofz360.675
_version_ 1783462444844187648
author Zhu, Wenming
McAllister, Gillian A
Jose Machado, Maria
Campbell, Davina
Karlsson, Maria
Rasheed, James
Kainer, Marion A
Muleta, Daniel
Walters, Maroya S
Grass, Julian E
Halpin, Alison L
Stanton, Richard A
author_facet Zhu, Wenming
McAllister, Gillian A
Jose Machado, Maria
Campbell, Davina
Karlsson, Maria
Rasheed, James
Kainer, Marion A
Muleta, Daniel
Walters, Maroya S
Grass, Julian E
Halpin, Alison L
Stanton, Richard A
author_sort Zhu, Wenming
collection PubMed
description BACKGROUND: Carbapenemases, a global health threat, are a diverse group of β-lactamases active against cephalosporins and carbapenems, which are often last resort treatments for multidrug-resistant gram-negative infections. The most common carbapenemases reported among Pseudomonas aeruginosa are metallo-β-lactamase (MBLs). We describe a novel MBL (designated HMB-2) identified in a P. aeruginosa isolate from a urine specimen collected in 2015 as part of CDC’s Emerging Infections Program. METHODS: We performed antimicrobial susceptibility testing (AST) by broth microdilution, real-time PCR to screen for common carbapenemases (IMP, KPC, NDM, VIM, and OXA-48), and modified carbapenem inactivation method (mCIM) to test for carbapenemase production. The isolate underwent whole-genome sequencing (WGS) using Illumina MiSeq and PacBio RS II (Pacific Biosciences) platforms. Long read sequences were polished using Quiver and corrected by Pilon utilizing Illumina reads. We further characterized a putative novel MBL identified in WGS data by amplifying and cloning the gene into the pCR2.1-TOPO II vector (Invitrogen), which was then sub-cloned into a pET21 expression vector (Sigma–Aldrich). The resulting hmb2+ pET21 plasmid was transformed into a susceptible Escherichia coli for AST, including the imipenem-EDTA method to confirm MBL activity. RESULTS: The isolate displayed resistance to carbapenems and demonstrated phenotypic carbapenemase activity (mCIM positive), but was negative for carbapenemase genes by PCR. WGS analyses identified a putative MBL gene located on the chromosome. The gene shared 98% DNA and protein sequence identity with an MBL reported in 2016 in a P. aeruginosa isolate from Germany (HMB-1) and thus was named hmb-2. The cloned hmb-2 gene conferred resistance to carbapenems (meropenem and ertapenem) and third-generation cephalosporins (cefotaxime and ceftazidime) in transformed E. coli. The Minimum Inhibitory Concentrationratio for the imipenem-EDTA method was ≥4. CONCLUSION: A putative, novel β-lactamase gene, bla(HMB-2), was identified and cloned. The imipenem-EDTA results indicated that HMB-2 is an MBL. This discovery underscores the important role WGS plays in identifying new mechanisms of antimicrobial resistance. DISCLOSURES: All authors: No reported disclosures.
format Online
Article
Text
id pubmed-6811285
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-68112852019-10-29 606. Identification and Characterization of HMB-2, a Novel Metallo-β-Lactamase in a Pseudomonas aeruginosa Isolate Zhu, Wenming McAllister, Gillian A Jose Machado, Maria Campbell, Davina Karlsson, Maria Rasheed, James Kainer, Marion A Muleta, Daniel Walters, Maroya S Grass, Julian E Halpin, Alison L Stanton, Richard A Open Forum Infect Dis Abstracts BACKGROUND: Carbapenemases, a global health threat, are a diverse group of β-lactamases active against cephalosporins and carbapenems, which are often last resort treatments for multidrug-resistant gram-negative infections. The most common carbapenemases reported among Pseudomonas aeruginosa are metallo-β-lactamase (MBLs). We describe a novel MBL (designated HMB-2) identified in a P. aeruginosa isolate from a urine specimen collected in 2015 as part of CDC’s Emerging Infections Program. METHODS: We performed antimicrobial susceptibility testing (AST) by broth microdilution, real-time PCR to screen for common carbapenemases (IMP, KPC, NDM, VIM, and OXA-48), and modified carbapenem inactivation method (mCIM) to test for carbapenemase production. The isolate underwent whole-genome sequencing (WGS) using Illumina MiSeq and PacBio RS II (Pacific Biosciences) platforms. Long read sequences were polished using Quiver and corrected by Pilon utilizing Illumina reads. We further characterized a putative novel MBL identified in WGS data by amplifying and cloning the gene into the pCR2.1-TOPO II vector (Invitrogen), which was then sub-cloned into a pET21 expression vector (Sigma–Aldrich). The resulting hmb2+ pET21 plasmid was transformed into a susceptible Escherichia coli for AST, including the imipenem-EDTA method to confirm MBL activity. RESULTS: The isolate displayed resistance to carbapenems and demonstrated phenotypic carbapenemase activity (mCIM positive), but was negative for carbapenemase genes by PCR. WGS analyses identified a putative MBL gene located on the chromosome. The gene shared 98% DNA and protein sequence identity with an MBL reported in 2016 in a P. aeruginosa isolate from Germany (HMB-1) and thus was named hmb-2. The cloned hmb-2 gene conferred resistance to carbapenems (meropenem and ertapenem) and third-generation cephalosporins (cefotaxime and ceftazidime) in transformed E. coli. The Minimum Inhibitory Concentrationratio for the imipenem-EDTA method was ≥4. CONCLUSION: A putative, novel β-lactamase gene, bla(HMB-2), was identified and cloned. The imipenem-EDTA results indicated that HMB-2 is an MBL. This discovery underscores the important role WGS plays in identifying new mechanisms of antimicrobial resistance. DISCLOSURES: All authors: No reported disclosures. Oxford University Press 2019-10-23 /pmc/articles/PMC6811285/ http://dx.doi.org/10.1093/ofid/ofz360.675 Text en © The Author(s) 2019. Published by Oxford University Press on behalf of Infectious Diseases Society of America. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs licence (http://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial reproduction and distribution of the work, in any medium, provided the original work is not altered or transformed in any way, and that the work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Abstracts
Zhu, Wenming
McAllister, Gillian A
Jose Machado, Maria
Campbell, Davina
Karlsson, Maria
Rasheed, James
Kainer, Marion A
Muleta, Daniel
Walters, Maroya S
Grass, Julian E
Halpin, Alison L
Stanton, Richard A
606. Identification and Characterization of HMB-2, a Novel Metallo-β-Lactamase in a Pseudomonas aeruginosa Isolate
title 606. Identification and Characterization of HMB-2, a Novel Metallo-β-Lactamase in a Pseudomonas aeruginosa Isolate
title_full 606. Identification and Characterization of HMB-2, a Novel Metallo-β-Lactamase in a Pseudomonas aeruginosa Isolate
title_fullStr 606. Identification and Characterization of HMB-2, a Novel Metallo-β-Lactamase in a Pseudomonas aeruginosa Isolate
title_full_unstemmed 606. Identification and Characterization of HMB-2, a Novel Metallo-β-Lactamase in a Pseudomonas aeruginosa Isolate
title_short 606. Identification and Characterization of HMB-2, a Novel Metallo-β-Lactamase in a Pseudomonas aeruginosa Isolate
title_sort 606. identification and characterization of hmb-2, a novel metallo-β-lactamase in a pseudomonas aeruginosa isolate
topic Abstracts
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6811285/
http://dx.doi.org/10.1093/ofid/ofz360.675
work_keys_str_mv AT zhuwenming 606identificationandcharacterizationofhmb2anovelmetalloblactamaseinapseudomonasaeruginosaisolate
AT mcallistergilliana 606identificationandcharacterizationofhmb2anovelmetalloblactamaseinapseudomonasaeruginosaisolate
AT josemachadomaria 606identificationandcharacterizationofhmb2anovelmetalloblactamaseinapseudomonasaeruginosaisolate
AT campbelldavina 606identificationandcharacterizationofhmb2anovelmetalloblactamaseinapseudomonasaeruginosaisolate
AT karlssonmaria 606identificationandcharacterizationofhmb2anovelmetalloblactamaseinapseudomonasaeruginosaisolate
AT rasheedjames 606identificationandcharacterizationofhmb2anovelmetalloblactamaseinapseudomonasaeruginosaisolate
AT kainermariona 606identificationandcharacterizationofhmb2anovelmetalloblactamaseinapseudomonasaeruginosaisolate
AT muletadaniel 606identificationandcharacterizationofhmb2anovelmetalloblactamaseinapseudomonasaeruginosaisolate
AT waltersmaroyas 606identificationandcharacterizationofhmb2anovelmetalloblactamaseinapseudomonasaeruginosaisolate
AT grassjuliane 606identificationandcharacterizationofhmb2anovelmetalloblactamaseinapseudomonasaeruginosaisolate
AT halpinalisonl 606identificationandcharacterizationofhmb2anovelmetalloblactamaseinapseudomonasaeruginosaisolate
AT stantonricharda 606identificationandcharacterizationofhmb2anovelmetalloblactamaseinapseudomonasaeruginosaisolate