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485. Clinical and Molecular Epidemiology of Carbapenem Non-susceptible Citrobacter sp.
BACKGROUND: Carbapenem non-susceptible Citrobacter sp. (CNSC) are becoming increasingly recognized as healthcare-associated (HA) pathogens, but data on clinical and molecular epidemiology, species diversity and mechanisms of carbapenem resistance are lacking. METHODS: We reviewed patients at Univers...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6811300/ http://dx.doi.org/10.1093/ofid/ofz360.558 |
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author | Babiker, Ahmed Evans, Daniel R Griffifth, Marrisa P Mettus, Roberta T McElheny, Christi L Clarke, Lloyd Harrison, Lee Doi, Yohei Shields, Ryan K Van Tyne, Daria |
author_facet | Babiker, Ahmed Evans, Daniel R Griffifth, Marrisa P Mettus, Roberta T McElheny, Christi L Clarke, Lloyd Harrison, Lee Doi, Yohei Shields, Ryan K Van Tyne, Daria |
author_sort | Babiker, Ahmed |
collection | PubMed |
description | BACKGROUND: Carbapenem non-susceptible Citrobacter sp. (CNSC) are becoming increasingly recognized as healthcare-associated (HA) pathogens, but data on clinical and molecular epidemiology, species diversity and mechanisms of carbapenem resistance are lacking. METHODS: We reviewed patients at University of Pittsburgh Medical Center with CNSC positive cultures from 2000 to 2018. The diversity of CNSC species among a subset of isolates from all UPMC sites was confirmed by 16S rRNA typing, and the presence of carbapenemase enzymes in the same isolates was determined by PCR amplificon. Minimum inhibitory concentrations (MICs) were determined by broth microdilution. Significance of epidemiological trends over time was determined by linear regression, and correlation with antibiotic consumption was determined by cross-correlation using STATA v15. RESULTS: Between 2000 and 2018, 3% (78/2817) of all Citrobacter sp. were CNS. CNSC rates increased from 4% in 2000 to 10% in 2018 (R(2) = 0.206, P = 0.05), as did carbapenem consumption (6.5–34.5 DDDs/1000, R(2) = 0.831, P < 0.001) (Figure 1). Twenty-one isolates from 19 patients were available for additional analysis. Patients had multiple comorbidities (84%), frequently acquired CNSC in the healthcare setting (84%), were colonized with other organisms (68%), and had high rates of in-hospital mortality/discharge to hospice (47%) (Table 1). C. freundii was the dominant species identified (16/21), followed by C. farmeri (2/21), C. koseri (2/21), and C. werkmanii (1/21). Carbapenemases were identified in 14 isolates, including KPC (n = 12), NDM (n = 2), and OXA-48 (n = 1) (Table 2). Isolates were frequently susceptible to ceftazidime–avibactam (MIC median [IQR]: 2[0.5,8]) 81%) and meropenem-vaborbactam (86%) (MIC median [IQR] 0.12[0.3,0.5]) (Table 2). CONCLUSION: CNSC species are diverse, have emerged as an HA pathogen at our center, and cause high rates of mortality. Further studies, including ongoing genome sequencing and analysis, are required to better elucidate CNSC diversity and resistance mechanisms. [Image: see text] [Image: see text] [Image: see text] DISCLOSURES: All authors: No reported disclosures. |
format | Online Article Text |
id | pubmed-6811300 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-68113002019-10-29 485. Clinical and Molecular Epidemiology of Carbapenem Non-susceptible Citrobacter sp. Babiker, Ahmed Evans, Daniel R Griffifth, Marrisa P Mettus, Roberta T McElheny, Christi L Clarke, Lloyd Harrison, Lee Doi, Yohei Shields, Ryan K Van Tyne, Daria Open Forum Infect Dis Abstracts BACKGROUND: Carbapenem non-susceptible Citrobacter sp. (CNSC) are becoming increasingly recognized as healthcare-associated (HA) pathogens, but data on clinical and molecular epidemiology, species diversity and mechanisms of carbapenem resistance are lacking. METHODS: We reviewed patients at University of Pittsburgh Medical Center with CNSC positive cultures from 2000 to 2018. The diversity of CNSC species among a subset of isolates from all UPMC sites was confirmed by 16S rRNA typing, and the presence of carbapenemase enzymes in the same isolates was determined by PCR amplificon. Minimum inhibitory concentrations (MICs) were determined by broth microdilution. Significance of epidemiological trends over time was determined by linear regression, and correlation with antibiotic consumption was determined by cross-correlation using STATA v15. RESULTS: Between 2000 and 2018, 3% (78/2817) of all Citrobacter sp. were CNS. CNSC rates increased from 4% in 2000 to 10% in 2018 (R(2) = 0.206, P = 0.05), as did carbapenem consumption (6.5–34.5 DDDs/1000, R(2) = 0.831, P < 0.001) (Figure 1). Twenty-one isolates from 19 patients were available for additional analysis. Patients had multiple comorbidities (84%), frequently acquired CNSC in the healthcare setting (84%), were colonized with other organisms (68%), and had high rates of in-hospital mortality/discharge to hospice (47%) (Table 1). C. freundii was the dominant species identified (16/21), followed by C. farmeri (2/21), C. koseri (2/21), and C. werkmanii (1/21). Carbapenemases were identified in 14 isolates, including KPC (n = 12), NDM (n = 2), and OXA-48 (n = 1) (Table 2). Isolates were frequently susceptible to ceftazidime–avibactam (MIC median [IQR]: 2[0.5,8]) 81%) and meropenem-vaborbactam (86%) (MIC median [IQR] 0.12[0.3,0.5]) (Table 2). CONCLUSION: CNSC species are diverse, have emerged as an HA pathogen at our center, and cause high rates of mortality. Further studies, including ongoing genome sequencing and analysis, are required to better elucidate CNSC diversity and resistance mechanisms. [Image: see text] [Image: see text] [Image: see text] DISCLOSURES: All authors: No reported disclosures. Oxford University Press 2019-10-23 /pmc/articles/PMC6811300/ http://dx.doi.org/10.1093/ofid/ofz360.558 Text en © The Author(s) 2019. Published by Oxford University Press on behalf of Infectious Diseases Society of America. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs licence (http://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial reproduction and distribution of the work, in any medium, provided the original work is not altered or transformed in any way, and that the work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Abstracts Babiker, Ahmed Evans, Daniel R Griffifth, Marrisa P Mettus, Roberta T McElheny, Christi L Clarke, Lloyd Harrison, Lee Doi, Yohei Shields, Ryan K Van Tyne, Daria 485. Clinical and Molecular Epidemiology of Carbapenem Non-susceptible Citrobacter sp. |
title | 485. Clinical and Molecular Epidemiology of Carbapenem Non-susceptible Citrobacter sp. |
title_full | 485. Clinical and Molecular Epidemiology of Carbapenem Non-susceptible Citrobacter sp. |
title_fullStr | 485. Clinical and Molecular Epidemiology of Carbapenem Non-susceptible Citrobacter sp. |
title_full_unstemmed | 485. Clinical and Molecular Epidemiology of Carbapenem Non-susceptible Citrobacter sp. |
title_short | 485. Clinical and Molecular Epidemiology of Carbapenem Non-susceptible Citrobacter sp. |
title_sort | 485. clinical and molecular epidemiology of carbapenem non-susceptible citrobacter sp. |
topic | Abstracts |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6811300/ http://dx.doi.org/10.1093/ofid/ofz360.558 |
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