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Tumor Banks: A Quality Control Scheme Proposal

Introduction: Tumor banks make a considerable contribution to translational research. Using emerging molecular tests on frozen material facilitates the development of new diagnostic and therapeutic strategies, especially in rare cases. However, standard quality control schemes are lacking in the cur...

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Autores principales: Craciun, Ligia, Spinette, Selim Alex, Rassy, Marc, Salgado, Roberto, de Wind, Alexandre, Demetter, Pieter, Verset, Laurine, Gomez-Galdon, Maria, Chintinne, Marie, Sirtaine, Nicolas, de St Aubain, Nicolas, Laios, Ioanna, Roy, Francoise, Larsimont, Denis
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6811598/
https://www.ncbi.nlm.nih.gov/pubmed/31681781
http://dx.doi.org/10.3389/fmed.2019.00225
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author Craciun, Ligia
Spinette, Selim Alex
Rassy, Marc
Salgado, Roberto
de Wind, Alexandre
Demetter, Pieter
Verset, Laurine
Gomez-Galdon, Maria
Chintinne, Marie
Sirtaine, Nicolas
de St Aubain, Nicolas
Laios, Ioanna
Roy, Francoise
Larsimont, Denis
author_facet Craciun, Ligia
Spinette, Selim Alex
Rassy, Marc
Salgado, Roberto
de Wind, Alexandre
Demetter, Pieter
Verset, Laurine
Gomez-Galdon, Maria
Chintinne, Marie
Sirtaine, Nicolas
de St Aubain, Nicolas
Laios, Ioanna
Roy, Francoise
Larsimont, Denis
author_sort Craciun, Ligia
collection PubMed
description Introduction: Tumor banks make a considerable contribution to translational research. Using emerging molecular tests on frozen material facilitates the development of new diagnostic and therapeutic strategies, especially in rare cases. However, standard quality control schemes are lacking in the current literature. Methods: In 2017, we have conducted a robust quality control test on 100 of 15,000 fresh frozen samples collected between 2000 and 2013 at the Jules Bordet Tumor Bank (Brussels). RNA and DNA extraction was done. The quality of RNA, DNA and proteins were evaluated, respectively by measuring RNA Integrity Number (RIN), by checking Electrophoretic Integrity (EI) and by performing Immunohistochemistry staining (IHC). A score, ranging from poor (1) to excellent (4), was attributed based on technical analysis. Results: RNA purity was scored 4 in 97% of the cases, 3 in 2%, and 2 in 1%. RIN scores were similarly 4 in 89%, 3 in 10%, and 2 in 1% of the cases. DNA purity was scored 4 in 94% and 3 in 6%, EI was scored 4 in 100% of the cases. Despite morphology loss after freezing, HER2, ER, and Ki67 IHC stainings yielded a score of 4 in the majority of samples. Furthermore, participating in the ISBER Proficiency Testing helped us validate our techniques and the technician's work. Seven processing schemes were carried out, the scores obtained were very satisfactory (20/27) or satisfactory (7/27). Conclusion: Tumor Banks can be precious for translational research. Nevertheless, firm quality controls should be applied to ensure high quality material delivery. Only then can biobanks contribute to diagnostics, biomarkers discovery and reliable molecular test development.
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spelling pubmed-68115982019-11-03 Tumor Banks: A Quality Control Scheme Proposal Craciun, Ligia Spinette, Selim Alex Rassy, Marc Salgado, Roberto de Wind, Alexandre Demetter, Pieter Verset, Laurine Gomez-Galdon, Maria Chintinne, Marie Sirtaine, Nicolas de St Aubain, Nicolas Laios, Ioanna Roy, Francoise Larsimont, Denis Front Med (Lausanne) Medicine Introduction: Tumor banks make a considerable contribution to translational research. Using emerging molecular tests on frozen material facilitates the development of new diagnostic and therapeutic strategies, especially in rare cases. However, standard quality control schemes are lacking in the current literature. Methods: In 2017, we have conducted a robust quality control test on 100 of 15,000 fresh frozen samples collected between 2000 and 2013 at the Jules Bordet Tumor Bank (Brussels). RNA and DNA extraction was done. The quality of RNA, DNA and proteins were evaluated, respectively by measuring RNA Integrity Number (RIN), by checking Electrophoretic Integrity (EI) and by performing Immunohistochemistry staining (IHC). A score, ranging from poor (1) to excellent (4), was attributed based on technical analysis. Results: RNA purity was scored 4 in 97% of the cases, 3 in 2%, and 2 in 1%. RIN scores were similarly 4 in 89%, 3 in 10%, and 2 in 1% of the cases. DNA purity was scored 4 in 94% and 3 in 6%, EI was scored 4 in 100% of the cases. Despite morphology loss after freezing, HER2, ER, and Ki67 IHC stainings yielded a score of 4 in the majority of samples. Furthermore, participating in the ISBER Proficiency Testing helped us validate our techniques and the technician's work. Seven processing schemes were carried out, the scores obtained were very satisfactory (20/27) or satisfactory (7/27). Conclusion: Tumor Banks can be precious for translational research. Nevertheless, firm quality controls should be applied to ensure high quality material delivery. Only then can biobanks contribute to diagnostics, biomarkers discovery and reliable molecular test development. Frontiers Media S.A. 2019-10-17 /pmc/articles/PMC6811598/ /pubmed/31681781 http://dx.doi.org/10.3389/fmed.2019.00225 Text en Copyright © 2019 Craciun, Spinette, Rassy, Salgado, de Wind, Demetter, Verset, Gomez-Galdon, Chintinne, Sirtaine, de St Aubain, Laios, Roy and Larsimont. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Medicine
Craciun, Ligia
Spinette, Selim Alex
Rassy, Marc
Salgado, Roberto
de Wind, Alexandre
Demetter, Pieter
Verset, Laurine
Gomez-Galdon, Maria
Chintinne, Marie
Sirtaine, Nicolas
de St Aubain, Nicolas
Laios, Ioanna
Roy, Francoise
Larsimont, Denis
Tumor Banks: A Quality Control Scheme Proposal
title Tumor Banks: A Quality Control Scheme Proposal
title_full Tumor Banks: A Quality Control Scheme Proposal
title_fullStr Tumor Banks: A Quality Control Scheme Proposal
title_full_unstemmed Tumor Banks: A Quality Control Scheme Proposal
title_short Tumor Banks: A Quality Control Scheme Proposal
title_sort tumor banks: a quality control scheme proposal
topic Medicine
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6811598/
https://www.ncbi.nlm.nih.gov/pubmed/31681781
http://dx.doi.org/10.3389/fmed.2019.00225
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