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Anti-Colorectal Cancer Mechanisms of Formononetin Identified by Network Pharmacological Approach
BACKGROUND: The network pharmacological approach was used to identity the anti-colorectal cancer (CRC) targets of formononetin (FN) and the molecular mechanisms of FN against CRC. MATERIAL/METHODS: A tool of the DisGeNET database was used for collection of CRC-based targets. Other tools of SuperPred...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Scientific Literature, Inc.
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6812471/ https://www.ncbi.nlm.nih.gov/pubmed/31608899 http://dx.doi.org/10.12659/MSM.919935 |
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author | Zhang, Lei Gong, Yizhen Wang, Shuai Gao, Feng |
author_facet | Zhang, Lei Gong, Yizhen Wang, Shuai Gao, Feng |
author_sort | Zhang, Lei |
collection | PubMed |
description | BACKGROUND: The network pharmacological approach was used to identity the anti-colorectal cancer (CRC) targets of formononetin (FN) and the molecular mechanisms of FN against CRC. MATERIAL/METHODS: A tool of the DisGeNET database was used for collection of CRC-based targets. Other tools of SuperPred, herbal ingredients target (HIT), and SwissTargetPrediction databases were applied in prediction of pharmacological targets of FN against cancer. A protein-protein interaction (PPI) network of FN against CRC was obtained by using a STRING database. All top biological functional processes and signaling pathways of FN against CRC were identified by using Database for Annotation, Visualization and Integrated Discovery (DAVID) software and Omicshare cloud platform. RESULTS: The most key anti-CRC targets of FN were identified as tumor protein p53 (TP53), cytochrome P450 3A4 (CYP3A4), ATP binding cassette subfamily G member 2 (ABCG2), tumor necrosis factor (TNF), epidermal growth factor receptor (EGFR), Erb-B2 receptor tyrosine kinase 2 (ERBB2), and cytochrome P450 1A1 (CYP1A1). In further assays, the treatment of CRC by FN was mainly involved in biological functional processes of reactive oxygen species metabolic process, positive regulation of transcription, DNA-templated, positive regulation of nucleic acid-templated transcription, and positive regulation of RNA metabolic process. anti-CRC by FN of signaling pathways were associated with amyotrophic lateral sclerosis (ALS), allograft rejection, cytokine-cytokine receptor interaction, asthma, mitogen-activated protein kinase (MAPK) signaling pathways, and others. CONCLUSIONS: The anti-CRC molecular mechanisms of FN are implicated in suppression of cellular proliferation and regulation of cancer-related metabolic pathways. Interestingly, 8 optimal biological targets may be used as potential molecular markers for predicting and treating CRC. |
format | Online Article Text |
id | pubmed-6812471 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | International Scientific Literature, Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-68124712019-10-31 Anti-Colorectal Cancer Mechanisms of Formononetin Identified by Network Pharmacological Approach Zhang, Lei Gong, Yizhen Wang, Shuai Gao, Feng Med Sci Monit Clinical Research BACKGROUND: The network pharmacological approach was used to identity the anti-colorectal cancer (CRC) targets of formononetin (FN) and the molecular mechanisms of FN against CRC. MATERIAL/METHODS: A tool of the DisGeNET database was used for collection of CRC-based targets. Other tools of SuperPred, herbal ingredients target (HIT), and SwissTargetPrediction databases were applied in prediction of pharmacological targets of FN against cancer. A protein-protein interaction (PPI) network of FN against CRC was obtained by using a STRING database. All top biological functional processes and signaling pathways of FN against CRC were identified by using Database for Annotation, Visualization and Integrated Discovery (DAVID) software and Omicshare cloud platform. RESULTS: The most key anti-CRC targets of FN were identified as tumor protein p53 (TP53), cytochrome P450 3A4 (CYP3A4), ATP binding cassette subfamily G member 2 (ABCG2), tumor necrosis factor (TNF), epidermal growth factor receptor (EGFR), Erb-B2 receptor tyrosine kinase 2 (ERBB2), and cytochrome P450 1A1 (CYP1A1). In further assays, the treatment of CRC by FN was mainly involved in biological functional processes of reactive oxygen species metabolic process, positive regulation of transcription, DNA-templated, positive regulation of nucleic acid-templated transcription, and positive regulation of RNA metabolic process. anti-CRC by FN of signaling pathways were associated with amyotrophic lateral sclerosis (ALS), allograft rejection, cytokine-cytokine receptor interaction, asthma, mitogen-activated protein kinase (MAPK) signaling pathways, and others. CONCLUSIONS: The anti-CRC molecular mechanisms of FN are implicated in suppression of cellular proliferation and regulation of cancer-related metabolic pathways. Interestingly, 8 optimal biological targets may be used as potential molecular markers for predicting and treating CRC. International Scientific Literature, Inc. 2019-10-14 /pmc/articles/PMC6812471/ /pubmed/31608899 http://dx.doi.org/10.12659/MSM.919935 Text en © Med Sci Monit, 2019 This work is licensed under Creative Common Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0 (https://creativecommons.org/licenses/by-nc-nd/4.0/) ) |
spellingShingle | Clinical Research Zhang, Lei Gong, Yizhen Wang, Shuai Gao, Feng Anti-Colorectal Cancer Mechanisms of Formononetin Identified by Network Pharmacological Approach |
title | Anti-Colorectal Cancer Mechanisms of Formononetin Identified by Network Pharmacological Approach |
title_full | Anti-Colorectal Cancer Mechanisms of Formononetin Identified by Network Pharmacological Approach |
title_fullStr | Anti-Colorectal Cancer Mechanisms of Formononetin Identified by Network Pharmacological Approach |
title_full_unstemmed | Anti-Colorectal Cancer Mechanisms of Formononetin Identified by Network Pharmacological Approach |
title_short | Anti-Colorectal Cancer Mechanisms of Formononetin Identified by Network Pharmacological Approach |
title_sort | anti-colorectal cancer mechanisms of formononetin identified by network pharmacological approach |
topic | Clinical Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6812471/ https://www.ncbi.nlm.nih.gov/pubmed/31608899 http://dx.doi.org/10.12659/MSM.919935 |
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