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Potential molecular mechanism of ACE gene at different time points in STEMI patients based on genome-wide microarray dataset
BACKGROUND: This study aimed to investigate the angiotensin converting enzyme (ACE) co-expression genes and their pathways involved in ST-segment elevation myocardial infarction (STEMI) at different time points. METHODS: The array data set of GSE59867 was examined for the ACE co-expression genes in...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6813054/ https://www.ncbi.nlm.nih.gov/pubmed/31647035 http://dx.doi.org/10.1186/s12944-019-1131-3 |
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author | Guan, Yao-Zong Yin, Rui-Xing Zheng, Peng-Fei Deng, Guo-Xiong Liu, Chun-Xiao Wei, Bi-Liu |
author_facet | Guan, Yao-Zong Yin, Rui-Xing Zheng, Peng-Fei Deng, Guo-Xiong Liu, Chun-Xiao Wei, Bi-Liu |
author_sort | Guan, Yao-Zong |
collection | PubMed |
description | BACKGROUND: This study aimed to investigate the angiotensin converting enzyme (ACE) co-expression genes and their pathways involved in ST-segment elevation myocardial infarction (STEMI) at different time points. METHODS: The array data set of GSE59867 was examined for the ACE co-expression genes in peripheral blood samples from 111 patients with STEMI at four time points (admission, discharge, and 1 and 6 months after MI). Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment, Gene Ontology (GO) annotation and protein-protein interaction (PPI) of the co-expression genes were determined using online analytical tools. The Cytoscape software was used to create modules and hub genes. RESULTS: The number of biological processes (BP), cellular components (CC) and molecular functions (MF) was 43, 22 and 24 at admission; 18, 19 and 11 at discharge; 30, 37 and 21 at 1 month after MI; and 12, 19 and 14 at 6 months after MI; respectively. There were 6 BP, 8 CC and 4 MF enriched at every time point. The co-expression genes were substantially enriched in 12, 5, 6 and 14 KEGG pathways at the four time points, respectively, but no KEGG pathway was found to be common in all time points. We identified 132 intersectional co-expression genes (90 positive and 42 negative) from the four time points and 17 BP, 13 CC, 11 MF and 7 KEGG pathways were enriched. In addition, the PPI network contained 129 nodes and 570 edges, and only 1 module was identified to be significantly enriched in just 1 BP (chromatin-mediated maintenance of transcription). CONCLUSIONS: The results of the present study showed that the ACE co-expression genes and their pathways involved in STEMI were significantly different at four different time points. These findings may be helpful for further understanding the functions and roles of ACE in different stages of STEMI, and providing reference for the treatment of STEMI. |
format | Online Article Text |
id | pubmed-6813054 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-68130542019-10-30 Potential molecular mechanism of ACE gene at different time points in STEMI patients based on genome-wide microarray dataset Guan, Yao-Zong Yin, Rui-Xing Zheng, Peng-Fei Deng, Guo-Xiong Liu, Chun-Xiao Wei, Bi-Liu Lipids Health Dis Research BACKGROUND: This study aimed to investigate the angiotensin converting enzyme (ACE) co-expression genes and their pathways involved in ST-segment elevation myocardial infarction (STEMI) at different time points. METHODS: The array data set of GSE59867 was examined for the ACE co-expression genes in peripheral blood samples from 111 patients with STEMI at four time points (admission, discharge, and 1 and 6 months after MI). Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment, Gene Ontology (GO) annotation and protein-protein interaction (PPI) of the co-expression genes were determined using online analytical tools. The Cytoscape software was used to create modules and hub genes. RESULTS: The number of biological processes (BP), cellular components (CC) and molecular functions (MF) was 43, 22 and 24 at admission; 18, 19 and 11 at discharge; 30, 37 and 21 at 1 month after MI; and 12, 19 and 14 at 6 months after MI; respectively. There were 6 BP, 8 CC and 4 MF enriched at every time point. The co-expression genes were substantially enriched in 12, 5, 6 and 14 KEGG pathways at the four time points, respectively, but no KEGG pathway was found to be common in all time points. We identified 132 intersectional co-expression genes (90 positive and 42 negative) from the four time points and 17 BP, 13 CC, 11 MF and 7 KEGG pathways were enriched. In addition, the PPI network contained 129 nodes and 570 edges, and only 1 module was identified to be significantly enriched in just 1 BP (chromatin-mediated maintenance of transcription). CONCLUSIONS: The results of the present study showed that the ACE co-expression genes and their pathways involved in STEMI were significantly different at four different time points. These findings may be helpful for further understanding the functions and roles of ACE in different stages of STEMI, and providing reference for the treatment of STEMI. BioMed Central 2019-10-23 /pmc/articles/PMC6813054/ /pubmed/31647035 http://dx.doi.org/10.1186/s12944-019-1131-3 Text en © The Author(s). 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Guan, Yao-Zong Yin, Rui-Xing Zheng, Peng-Fei Deng, Guo-Xiong Liu, Chun-Xiao Wei, Bi-Liu Potential molecular mechanism of ACE gene at different time points in STEMI patients based on genome-wide microarray dataset |
title | Potential molecular mechanism of ACE gene at different time points in STEMI patients based on genome-wide microarray dataset |
title_full | Potential molecular mechanism of ACE gene at different time points in STEMI patients based on genome-wide microarray dataset |
title_fullStr | Potential molecular mechanism of ACE gene at different time points in STEMI patients based on genome-wide microarray dataset |
title_full_unstemmed | Potential molecular mechanism of ACE gene at different time points in STEMI patients based on genome-wide microarray dataset |
title_short | Potential molecular mechanism of ACE gene at different time points in STEMI patients based on genome-wide microarray dataset |
title_sort | potential molecular mechanism of ace gene at different time points in stemi patients based on genome-wide microarray dataset |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6813054/ https://www.ncbi.nlm.nih.gov/pubmed/31647035 http://dx.doi.org/10.1186/s12944-019-1131-3 |
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