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ProtMiscuity: a database of promiscuous proteins

Promiscuous behaviour in proteins and enzymes remains a challenging feature to understand the structure–function relationship. Here we present ProtMiscuity, a manually curated online database of proteins showing catalytic promiscuity. ProtMiscuity contains information about canonical and promiscuous...

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Autores principales: Velez Rueda, Ana Julia, Palopoli, Nicolas, Zacarías, Matías, Sommese, Leandro Matías, Parisi, Gustavo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6813136/
https://www.ncbi.nlm.nih.gov/pubmed/31650170
http://dx.doi.org/10.1093/database/baz103
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author Velez Rueda, Ana Julia
Palopoli, Nicolas
Zacarías, Matías
Sommese, Leandro Matías
Parisi, Gustavo
author_facet Velez Rueda, Ana Julia
Palopoli, Nicolas
Zacarías, Matías
Sommese, Leandro Matías
Parisi, Gustavo
author_sort Velez Rueda, Ana Julia
collection PubMed
description Promiscuous behaviour in proteins and enzymes remains a challenging feature to understand the structure–function relationship. Here we present ProtMiscuity, a manually curated online database of proteins showing catalytic promiscuity. ProtMiscuity contains information about canonical and promiscuous activities comprising 88 different reactions in 57 proteins from 40 different organisms. It can be searched or browsed by protein names, organisms and descriptions of canonical and promiscuous reactions. Entries provide information on reaction substrates, products and kinetic parameters, mapping of active sites to sequence and structure and links to external resources with biological and functional annotations. ProtMiscuity could assist in studying the underlying mechanisms of promiscuous reactions by offering a unique and curated collection of experimentally derived data that is otherwise hard to find, retrieve and validate from literature.
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spelling pubmed-68131362019-10-29 ProtMiscuity: a database of promiscuous proteins Velez Rueda, Ana Julia Palopoli, Nicolas Zacarías, Matías Sommese, Leandro Matías Parisi, Gustavo Database (Oxford) Original Article Promiscuous behaviour in proteins and enzymes remains a challenging feature to understand the structure–function relationship. Here we present ProtMiscuity, a manually curated online database of proteins showing catalytic promiscuity. ProtMiscuity contains information about canonical and promiscuous activities comprising 88 different reactions in 57 proteins from 40 different organisms. It can be searched or browsed by protein names, organisms and descriptions of canonical and promiscuous reactions. Entries provide information on reaction substrates, products and kinetic parameters, mapping of active sites to sequence and structure and links to external resources with biological and functional annotations. ProtMiscuity could assist in studying the underlying mechanisms of promiscuous reactions by offering a unique and curated collection of experimentally derived data that is otherwise hard to find, retrieve and validate from literature. Oxford University Press 2019-10-24 /pmc/articles/PMC6813136/ /pubmed/31650170 http://dx.doi.org/10.1093/database/baz103 Text en © The Author(s) 2019. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Velez Rueda, Ana Julia
Palopoli, Nicolas
Zacarías, Matías
Sommese, Leandro Matías
Parisi, Gustavo
ProtMiscuity: a database of promiscuous proteins
title ProtMiscuity: a database of promiscuous proteins
title_full ProtMiscuity: a database of promiscuous proteins
title_fullStr ProtMiscuity: a database of promiscuous proteins
title_full_unstemmed ProtMiscuity: a database of promiscuous proteins
title_short ProtMiscuity: a database of promiscuous proteins
title_sort protmiscuity: a database of promiscuous proteins
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6813136/
https://www.ncbi.nlm.nih.gov/pubmed/31650170
http://dx.doi.org/10.1093/database/baz103
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