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ProtMiscuity: a database of promiscuous proteins
Promiscuous behaviour in proteins and enzymes remains a challenging feature to understand the structure–function relationship. Here we present ProtMiscuity, a manually curated online database of proteins showing catalytic promiscuity. ProtMiscuity contains information about canonical and promiscuous...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6813136/ https://www.ncbi.nlm.nih.gov/pubmed/31650170 http://dx.doi.org/10.1093/database/baz103 |
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author | Velez Rueda, Ana Julia Palopoli, Nicolas Zacarías, Matías Sommese, Leandro Matías Parisi, Gustavo |
author_facet | Velez Rueda, Ana Julia Palopoli, Nicolas Zacarías, Matías Sommese, Leandro Matías Parisi, Gustavo |
author_sort | Velez Rueda, Ana Julia |
collection | PubMed |
description | Promiscuous behaviour in proteins and enzymes remains a challenging feature to understand the structure–function relationship. Here we present ProtMiscuity, a manually curated online database of proteins showing catalytic promiscuity. ProtMiscuity contains information about canonical and promiscuous activities comprising 88 different reactions in 57 proteins from 40 different organisms. It can be searched or browsed by protein names, organisms and descriptions of canonical and promiscuous reactions. Entries provide information on reaction substrates, products and kinetic parameters, mapping of active sites to sequence and structure and links to external resources with biological and functional annotations. ProtMiscuity could assist in studying the underlying mechanisms of promiscuous reactions by offering a unique and curated collection of experimentally derived data that is otherwise hard to find, retrieve and validate from literature. |
format | Online Article Text |
id | pubmed-6813136 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-68131362019-10-29 ProtMiscuity: a database of promiscuous proteins Velez Rueda, Ana Julia Palopoli, Nicolas Zacarías, Matías Sommese, Leandro Matías Parisi, Gustavo Database (Oxford) Original Article Promiscuous behaviour in proteins and enzymes remains a challenging feature to understand the structure–function relationship. Here we present ProtMiscuity, a manually curated online database of proteins showing catalytic promiscuity. ProtMiscuity contains information about canonical and promiscuous activities comprising 88 different reactions in 57 proteins from 40 different organisms. It can be searched or browsed by protein names, organisms and descriptions of canonical and promiscuous reactions. Entries provide information on reaction substrates, products and kinetic parameters, mapping of active sites to sequence and structure and links to external resources with biological and functional annotations. ProtMiscuity could assist in studying the underlying mechanisms of promiscuous reactions by offering a unique and curated collection of experimentally derived data that is otherwise hard to find, retrieve and validate from literature. Oxford University Press 2019-10-24 /pmc/articles/PMC6813136/ /pubmed/31650170 http://dx.doi.org/10.1093/database/baz103 Text en © The Author(s) 2019. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Article Velez Rueda, Ana Julia Palopoli, Nicolas Zacarías, Matías Sommese, Leandro Matías Parisi, Gustavo ProtMiscuity: a database of promiscuous proteins |
title | ProtMiscuity: a database of promiscuous proteins |
title_full | ProtMiscuity: a database of promiscuous proteins |
title_fullStr | ProtMiscuity: a database of promiscuous proteins |
title_full_unstemmed | ProtMiscuity: a database of promiscuous proteins |
title_short | ProtMiscuity: a database of promiscuous proteins |
title_sort | protmiscuity: a database of promiscuous proteins |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6813136/ https://www.ncbi.nlm.nih.gov/pubmed/31650170 http://dx.doi.org/10.1093/database/baz103 |
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