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Cryo-Gel embedding compound for renal biopsy biobanking
Optimal preservation and biobanking of renal tissue is vital for good diagnostics and subsequent research. Optimal cutting temperature (OCT) compound is a commonly used embedding medium for freezing tissue samples. However, due to interfering polymers in OCT, analysis as mass spectrometry (MS) is di...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6813323/ https://www.ncbi.nlm.nih.gov/pubmed/31649317 http://dx.doi.org/10.1038/s41598-019-51962-8 |
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author | Snijders, Malou L. H. Zajec, Marina Walter, Laurens A. J. de Louw, Remco M. A. A. Oomen, Monique H. A. Arshad, Shazia van den Bosch, Thierry P. P. Dekker, Lennard J. M. Doukas, Michail Luider, Theo M. Riegman, Peter H. J. van Kemenade, Folkert J. Clahsen-van Groningen, Marian C. |
author_facet | Snijders, Malou L. H. Zajec, Marina Walter, Laurens A. J. de Louw, Remco M. A. A. Oomen, Monique H. A. Arshad, Shazia van den Bosch, Thierry P. P. Dekker, Lennard J. M. Doukas, Michail Luider, Theo M. Riegman, Peter H. J. van Kemenade, Folkert J. Clahsen-van Groningen, Marian C. |
author_sort | Snijders, Malou L. H. |
collection | PubMed |
description | Optimal preservation and biobanking of renal tissue is vital for good diagnostics and subsequent research. Optimal cutting temperature (OCT) compound is a commonly used embedding medium for freezing tissue samples. However, due to interfering polymers in OCT, analysis as mass spectrometry (MS) is difficult. We investigated if the replacement of OCT with Cryo-Gel as embedding compound for renal biopsies would enable proteomics and not disturb other common techniques used in tissue diagnostics and research. For the present study, fresh renal samples were snap-frozen using Cryo-Gel, OCT and without embedding compound and evaluated using different techniques. In addition, tissue samples from normal spleen, skin, liver and colon were analyzed. Cryo-Gel embedded tissues showed good morphological preservation and no interference in immunohistochemical or immunofluorescent investigations. The quality of extracted RNA and DNA was good. The number of proteins identified using MS was similar between Cryo-Gel embedded samples, samples without embedding compound and OCT embedded samples. However, polymers in the OCT disturbed the signal in the MS, while this was not observed in the Cryo-Gel embedded samples. We conclude that embedding of renal biopsies in Cryo-Gel is an excellent and preferable alternative for OCT compound for both diagnostic and research purposes, especially in those cases where proteomic analysis might be necessary. |
format | Online Article Text |
id | pubmed-6813323 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-68133232019-10-30 Cryo-Gel embedding compound for renal biopsy biobanking Snijders, Malou L. H. Zajec, Marina Walter, Laurens A. J. de Louw, Remco M. A. A. Oomen, Monique H. A. Arshad, Shazia van den Bosch, Thierry P. P. Dekker, Lennard J. M. Doukas, Michail Luider, Theo M. Riegman, Peter H. J. van Kemenade, Folkert J. Clahsen-van Groningen, Marian C. Sci Rep Article Optimal preservation and biobanking of renal tissue is vital for good diagnostics and subsequent research. Optimal cutting temperature (OCT) compound is a commonly used embedding medium for freezing tissue samples. However, due to interfering polymers in OCT, analysis as mass spectrometry (MS) is difficult. We investigated if the replacement of OCT with Cryo-Gel as embedding compound for renal biopsies would enable proteomics and not disturb other common techniques used in tissue diagnostics and research. For the present study, fresh renal samples were snap-frozen using Cryo-Gel, OCT and without embedding compound and evaluated using different techniques. In addition, tissue samples from normal spleen, skin, liver and colon were analyzed. Cryo-Gel embedded tissues showed good morphological preservation and no interference in immunohistochemical or immunofluorescent investigations. The quality of extracted RNA and DNA was good. The number of proteins identified using MS was similar between Cryo-Gel embedded samples, samples without embedding compound and OCT embedded samples. However, polymers in the OCT disturbed the signal in the MS, while this was not observed in the Cryo-Gel embedded samples. We conclude that embedding of renal biopsies in Cryo-Gel is an excellent and preferable alternative for OCT compound for both diagnostic and research purposes, especially in those cases where proteomic analysis might be necessary. Nature Publishing Group UK 2019-10-24 /pmc/articles/PMC6813323/ /pubmed/31649317 http://dx.doi.org/10.1038/s41598-019-51962-8 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Snijders, Malou L. H. Zajec, Marina Walter, Laurens A. J. de Louw, Remco M. A. A. Oomen, Monique H. A. Arshad, Shazia van den Bosch, Thierry P. P. Dekker, Lennard J. M. Doukas, Michail Luider, Theo M. Riegman, Peter H. J. van Kemenade, Folkert J. Clahsen-van Groningen, Marian C. Cryo-Gel embedding compound for renal biopsy biobanking |
title | Cryo-Gel embedding compound for renal biopsy biobanking |
title_full | Cryo-Gel embedding compound for renal biopsy biobanking |
title_fullStr | Cryo-Gel embedding compound for renal biopsy biobanking |
title_full_unstemmed | Cryo-Gel embedding compound for renal biopsy biobanking |
title_short | Cryo-Gel embedding compound for renal biopsy biobanking |
title_sort | cryo-gel embedding compound for renal biopsy biobanking |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6813323/ https://www.ncbi.nlm.nih.gov/pubmed/31649317 http://dx.doi.org/10.1038/s41598-019-51962-8 |
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