Cargando…

Insight into picophytoplankton diversity of the subarctic White Sea—The first recording of Pedinophyceae in environmental DNA

Operational taxonomic units 94%–95% similar to the known Pedinophyceae were found as a result of high‐through sequencing of 18S rDNA V4 amplicons of environmental DNA from the summer picophytoplankton samples from the White Sea. Partial sequence of a ribosomal operon (the 5,298 bp includes partial 1...

Descripción completa

Detalles Bibliográficos
Autores principales: Milyutina, Irina A., Belevich, Tatyana A., Ilyash, Lyudmila V., Troitsky, Aleksey V.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6813492/
https://www.ncbi.nlm.nih.gov/pubmed/31184446
http://dx.doi.org/10.1002/mbo3.892
_version_ 1783462856127152128
author Milyutina, Irina A.
Belevich, Tatyana A.
Ilyash, Lyudmila V.
Troitsky, Aleksey V.
author_facet Milyutina, Irina A.
Belevich, Tatyana A.
Ilyash, Lyudmila V.
Troitsky, Aleksey V.
author_sort Milyutina, Irina A.
collection PubMed
description Operational taxonomic units 94%–95% similar to the known Pedinophyceae were found as a result of high‐through sequencing of 18S rDNA V4 amplicons of environmental DNA from the summer picophytoplankton samples from the White Sea. Partial sequence of a ribosomal operon (the 5,298 bp includes partial 18S and 28S rDNA, complete 5.8S rDNA, ITS1, and ITS2 sequences) and a partial 2,112 bp chloroplast 23S rDNA sequence White Sea Pedinophyceae was amplified from metagenomic DNA by specific primers and sequenced. A new phylotype was designated as uncultured Pedinophyceae WS. On Chlorophyta phylogenetic trees the discovered phylotype occupies a basal position in the Marsupiomonadales clade. The synapomorphic base substitutions in rRNA hairpins confirm the relationship of Pedinophyceae WS to Marsupiomonadales and its difference from known genera of the order. The obtained results extend knowledge of picophytoplankton diversity in subarctic waters.
format Online
Article
Text
id pubmed-6813492
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-68134922019-10-30 Insight into picophytoplankton diversity of the subarctic White Sea—The first recording of Pedinophyceae in environmental DNA Milyutina, Irina A. Belevich, Tatyana A. Ilyash, Lyudmila V. Troitsky, Aleksey V. Microbiologyopen Original Articles Operational taxonomic units 94%–95% similar to the known Pedinophyceae were found as a result of high‐through sequencing of 18S rDNA V4 amplicons of environmental DNA from the summer picophytoplankton samples from the White Sea. Partial sequence of a ribosomal operon (the 5,298 bp includes partial 18S and 28S rDNA, complete 5.8S rDNA, ITS1, and ITS2 sequences) and a partial 2,112 bp chloroplast 23S rDNA sequence White Sea Pedinophyceae was amplified from metagenomic DNA by specific primers and sequenced. A new phylotype was designated as uncultured Pedinophyceae WS. On Chlorophyta phylogenetic trees the discovered phylotype occupies a basal position in the Marsupiomonadales clade. The synapomorphic base substitutions in rRNA hairpins confirm the relationship of Pedinophyceae WS to Marsupiomonadales and its difference from known genera of the order. The obtained results extend knowledge of picophytoplankton diversity in subarctic waters. John Wiley and Sons Inc. 2019-06-11 /pmc/articles/PMC6813492/ /pubmed/31184446 http://dx.doi.org/10.1002/mbo3.892 Text en © 2019 The Authors. MicrobiologyOpen published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
Milyutina, Irina A.
Belevich, Tatyana A.
Ilyash, Lyudmila V.
Troitsky, Aleksey V.
Insight into picophytoplankton diversity of the subarctic White Sea—The first recording of Pedinophyceae in environmental DNA
title Insight into picophytoplankton diversity of the subarctic White Sea—The first recording of Pedinophyceae in environmental DNA
title_full Insight into picophytoplankton diversity of the subarctic White Sea—The first recording of Pedinophyceae in environmental DNA
title_fullStr Insight into picophytoplankton diversity of the subarctic White Sea—The first recording of Pedinophyceae in environmental DNA
title_full_unstemmed Insight into picophytoplankton diversity of the subarctic White Sea—The first recording of Pedinophyceae in environmental DNA
title_short Insight into picophytoplankton diversity of the subarctic White Sea—The first recording of Pedinophyceae in environmental DNA
title_sort insight into picophytoplankton diversity of the subarctic white sea—the first recording of pedinophyceae in environmental dna
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6813492/
https://www.ncbi.nlm.nih.gov/pubmed/31184446
http://dx.doi.org/10.1002/mbo3.892
work_keys_str_mv AT milyutinairinaa insightintopicophytoplanktondiversityofthesubarcticwhiteseathefirstrecordingofpedinophyceaeinenvironmentaldna
AT belevichtatyanaa insightintopicophytoplanktondiversityofthesubarcticwhiteseathefirstrecordingofpedinophyceaeinenvironmentaldna
AT ilyashlyudmilav insightintopicophytoplanktondiversityofthesubarcticwhiteseathefirstrecordingofpedinophyceaeinenvironmentaldna
AT troitskyalekseyv insightintopicophytoplanktondiversityofthesubarcticwhiteseathefirstrecordingofpedinophyceaeinenvironmentaldna