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Insight into picophytoplankton diversity of the subarctic White Sea—The first recording of Pedinophyceae in environmental DNA
Operational taxonomic units 94%–95% similar to the known Pedinophyceae were found as a result of high‐through sequencing of 18S rDNA V4 amplicons of environmental DNA from the summer picophytoplankton samples from the White Sea. Partial sequence of a ribosomal operon (the 5,298 bp includes partial 1...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6813492/ https://www.ncbi.nlm.nih.gov/pubmed/31184446 http://dx.doi.org/10.1002/mbo3.892 |
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author | Milyutina, Irina A. Belevich, Tatyana A. Ilyash, Lyudmila V. Troitsky, Aleksey V. |
author_facet | Milyutina, Irina A. Belevich, Tatyana A. Ilyash, Lyudmila V. Troitsky, Aleksey V. |
author_sort | Milyutina, Irina A. |
collection | PubMed |
description | Operational taxonomic units 94%–95% similar to the known Pedinophyceae were found as a result of high‐through sequencing of 18S rDNA V4 amplicons of environmental DNA from the summer picophytoplankton samples from the White Sea. Partial sequence of a ribosomal operon (the 5,298 bp includes partial 18S and 28S rDNA, complete 5.8S rDNA, ITS1, and ITS2 sequences) and a partial 2,112 bp chloroplast 23S rDNA sequence White Sea Pedinophyceae was amplified from metagenomic DNA by specific primers and sequenced. A new phylotype was designated as uncultured Pedinophyceae WS. On Chlorophyta phylogenetic trees the discovered phylotype occupies a basal position in the Marsupiomonadales clade. The synapomorphic base substitutions in rRNA hairpins confirm the relationship of Pedinophyceae WS to Marsupiomonadales and its difference from known genera of the order. The obtained results extend knowledge of picophytoplankton diversity in subarctic waters. |
format | Online Article Text |
id | pubmed-6813492 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-68134922019-10-30 Insight into picophytoplankton diversity of the subarctic White Sea—The first recording of Pedinophyceae in environmental DNA Milyutina, Irina A. Belevich, Tatyana A. Ilyash, Lyudmila V. Troitsky, Aleksey V. Microbiologyopen Original Articles Operational taxonomic units 94%–95% similar to the known Pedinophyceae were found as a result of high‐through sequencing of 18S rDNA V4 amplicons of environmental DNA from the summer picophytoplankton samples from the White Sea. Partial sequence of a ribosomal operon (the 5,298 bp includes partial 18S and 28S rDNA, complete 5.8S rDNA, ITS1, and ITS2 sequences) and a partial 2,112 bp chloroplast 23S rDNA sequence White Sea Pedinophyceae was amplified from metagenomic DNA by specific primers and sequenced. A new phylotype was designated as uncultured Pedinophyceae WS. On Chlorophyta phylogenetic trees the discovered phylotype occupies a basal position in the Marsupiomonadales clade. The synapomorphic base substitutions in rRNA hairpins confirm the relationship of Pedinophyceae WS to Marsupiomonadales and its difference from known genera of the order. The obtained results extend knowledge of picophytoplankton diversity in subarctic waters. John Wiley and Sons Inc. 2019-06-11 /pmc/articles/PMC6813492/ /pubmed/31184446 http://dx.doi.org/10.1002/mbo3.892 Text en © 2019 The Authors. MicrobiologyOpen published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Articles Milyutina, Irina A. Belevich, Tatyana A. Ilyash, Lyudmila V. Troitsky, Aleksey V. Insight into picophytoplankton diversity of the subarctic White Sea—The first recording of Pedinophyceae in environmental DNA |
title | Insight into picophytoplankton diversity of the subarctic White Sea—The first recording of Pedinophyceae in environmental DNA |
title_full | Insight into picophytoplankton diversity of the subarctic White Sea—The first recording of Pedinophyceae in environmental DNA |
title_fullStr | Insight into picophytoplankton diversity of the subarctic White Sea—The first recording of Pedinophyceae in environmental DNA |
title_full_unstemmed | Insight into picophytoplankton diversity of the subarctic White Sea—The first recording of Pedinophyceae in environmental DNA |
title_short | Insight into picophytoplankton diversity of the subarctic White Sea—The first recording of Pedinophyceae in environmental DNA |
title_sort | insight into picophytoplankton diversity of the subarctic white sea—the first recording of pedinophyceae in environmental dna |
topic | Original Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6813492/ https://www.ncbi.nlm.nih.gov/pubmed/31184446 http://dx.doi.org/10.1002/mbo3.892 |
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