Cargando…

An eight-mRNA signature predicts the prognosis of patients with bladder urothelial carcinoma

BACKGROUND: Bladder cancer is one of the most common cancers, and its histopathological type is mainly bladder urothelial carcinoma, accounting for about 90%. The prognostic biomarkers of bladder cancer are classified into clinical features biomarkers and molecular biomarkers. Nevertheless, due to t...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhu, Rui, Yang, Xin, Guo, Wenna, Xu, Xin-Jian, Zhu, Liucun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6814068/
https://www.ncbi.nlm.nih.gov/pubmed/31660264
http://dx.doi.org/10.7717/peerj.7836
_version_ 1783462952438857728
author Zhu, Rui
Yang, Xin
Guo, Wenna
Xu, Xin-Jian
Zhu, Liucun
author_facet Zhu, Rui
Yang, Xin
Guo, Wenna
Xu, Xin-Jian
Zhu, Liucun
author_sort Zhu, Rui
collection PubMed
description BACKGROUND: Bladder cancer is one of the most common cancers, and its histopathological type is mainly bladder urothelial carcinoma, accounting for about 90%. The prognostic biomarkers of bladder cancer are classified into clinical features biomarkers and molecular biomarkers. Nevertheless, due to the existence of individual specificity, patients with similar pathological characteristics still have great differences in the risk of disease recurrence. Therefore, it is often inaccurate to predict the survival status of patients based on clinical characteristic biomarkers, and a prognostic molecular biomarker that can grade the risk of bladder cancer patients is needed. METHODS: A total of three bladder urothelial carcinoma datasets were used in this study from the Cancer Genome Atlas database and Gene Expression Omnibus database. In order to avoid overfitting, all samples were randomly divided into one training set and three validation sets, which were used to construct and test the prognostic biomarker model of bladder urothelial carcinoma. Univariate and multivariate Cox regression were used to screen candidate mRNAs and construct prognostic biomarkers model. Kaplan–Meier survival analysis and the receiver operating characteristic (ROC) curve were used to evaluate the predictive performance of the model. RESULTS: A prognostic biomarker model of bladder urothelial carcinoma combining with eight mRNA was constructed. Kaplan–Meier analyses indicated that a significant difference in the survival time of patients between the high-risk and the low-risk group. The area under the ROC curve were 0.632 (95% confidence interval (CI) [0.541–0.723]), 0.693 (95% CI [0.601–0.784]) and 0.686 (95% CI [0.540–0.831]) when the model was used to predict the patient’s survival time in three validation datasets. The model showed high accuracy and applicability.
format Online
Article
Text
id pubmed-6814068
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher PeerJ Inc.
record_format MEDLINE/PubMed
spelling pubmed-68140682019-10-28 An eight-mRNA signature predicts the prognosis of patients with bladder urothelial carcinoma Zhu, Rui Yang, Xin Guo, Wenna Xu, Xin-Jian Zhu, Liucun PeerJ Bioinformatics BACKGROUND: Bladder cancer is one of the most common cancers, and its histopathological type is mainly bladder urothelial carcinoma, accounting for about 90%. The prognostic biomarkers of bladder cancer are classified into clinical features biomarkers and molecular biomarkers. Nevertheless, due to the existence of individual specificity, patients with similar pathological characteristics still have great differences in the risk of disease recurrence. Therefore, it is often inaccurate to predict the survival status of patients based on clinical characteristic biomarkers, and a prognostic molecular biomarker that can grade the risk of bladder cancer patients is needed. METHODS: A total of three bladder urothelial carcinoma datasets were used in this study from the Cancer Genome Atlas database and Gene Expression Omnibus database. In order to avoid overfitting, all samples were randomly divided into one training set and three validation sets, which were used to construct and test the prognostic biomarker model of bladder urothelial carcinoma. Univariate and multivariate Cox regression were used to screen candidate mRNAs and construct prognostic biomarkers model. Kaplan–Meier survival analysis and the receiver operating characteristic (ROC) curve were used to evaluate the predictive performance of the model. RESULTS: A prognostic biomarker model of bladder urothelial carcinoma combining with eight mRNA was constructed. Kaplan–Meier analyses indicated that a significant difference in the survival time of patients between the high-risk and the low-risk group. The area under the ROC curve were 0.632 (95% confidence interval (CI) [0.541–0.723]), 0.693 (95% CI [0.601–0.784]) and 0.686 (95% CI [0.540–0.831]) when the model was used to predict the patient’s survival time in three validation datasets. The model showed high accuracy and applicability. PeerJ Inc. 2019-10-22 /pmc/articles/PMC6814068/ /pubmed/31660264 http://dx.doi.org/10.7717/peerj.7836 Text en © 2019 Zhu et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Bioinformatics
Zhu, Rui
Yang, Xin
Guo, Wenna
Xu, Xin-Jian
Zhu, Liucun
An eight-mRNA signature predicts the prognosis of patients with bladder urothelial carcinoma
title An eight-mRNA signature predicts the prognosis of patients with bladder urothelial carcinoma
title_full An eight-mRNA signature predicts the prognosis of patients with bladder urothelial carcinoma
title_fullStr An eight-mRNA signature predicts the prognosis of patients with bladder urothelial carcinoma
title_full_unstemmed An eight-mRNA signature predicts the prognosis of patients with bladder urothelial carcinoma
title_short An eight-mRNA signature predicts the prognosis of patients with bladder urothelial carcinoma
title_sort eight-mrna signature predicts the prognosis of patients with bladder urothelial carcinoma
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6814068/
https://www.ncbi.nlm.nih.gov/pubmed/31660264
http://dx.doi.org/10.7717/peerj.7836
work_keys_str_mv AT zhurui aneightmrnasignaturepredictstheprognosisofpatientswithbladderurothelialcarcinoma
AT yangxin aneightmrnasignaturepredictstheprognosisofpatientswithbladderurothelialcarcinoma
AT guowenna aneightmrnasignaturepredictstheprognosisofpatientswithbladderurothelialcarcinoma
AT xuxinjian aneightmrnasignaturepredictstheprognosisofpatientswithbladderurothelialcarcinoma
AT zhuliucun aneightmrnasignaturepredictstheprognosisofpatientswithbladderurothelialcarcinoma
AT zhurui eightmrnasignaturepredictstheprognosisofpatientswithbladderurothelialcarcinoma
AT yangxin eightmrnasignaturepredictstheprognosisofpatientswithbladderurothelialcarcinoma
AT guowenna eightmrnasignaturepredictstheprognosisofpatientswithbladderurothelialcarcinoma
AT xuxinjian eightmrnasignaturepredictstheprognosisofpatientswithbladderurothelialcarcinoma
AT zhuliucun eightmrnasignaturepredictstheprognosisofpatientswithbladderurothelialcarcinoma