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Development of SSR markers for Astragalus lehmannianus, a vulnerable species from northwestern China
PREMISE: Astragalus lehmannianus (Fabaceae) is a vulnerable species found in the cold deserts of northwestern China. We aimed to characterize polymorphic microsatellite loci for A. lehmannianus to support future studies of population genetic dynamics and conservation management of the species. METHO...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6814180/ https://www.ncbi.nlm.nih.gov/pubmed/31667025 http://dx.doi.org/10.1002/aps3.11297 |
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author | Wu, Mingying Shi, Xiaojun Tan, Dunyan |
author_facet | Wu, Mingying Shi, Xiaojun Tan, Dunyan |
author_sort | Wu, Mingying |
collection | PubMed |
description | PREMISE: Astragalus lehmannianus (Fabaceae) is a vulnerable species found in the cold deserts of northwestern China. We aimed to characterize polymorphic microsatellite loci for A. lehmannianus to support future studies of population genetic dynamics and conservation management of the species. METHODS AND RESULTS: We used next‐generation sequencing to detect polymorphic microsatellites. Twenty‐five potential microsatellite loci were identified, 12 of which were polymorphic and present in the three study populations of A. lehmannianus. Levels of observed and expected heterozygosities were 0.000–1.000 and 0.000–0.827, respectively. Furthermore, two and five of the 12 developed primers were successfully amplified in two congeneric species, A. arpilobus and A. oxyglottis, respectively. CONCLUSIONS: These newly developed microsatellite markers can be used to determine population diversity and to develop conservation strategies in A. lehmannianus. |
format | Online Article Text |
id | pubmed-6814180 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-68141802019-10-30 Development of SSR markers for Astragalus lehmannianus, a vulnerable species from northwestern China Wu, Mingying Shi, Xiaojun Tan, Dunyan Appl Plant Sci Primer Notes PREMISE: Astragalus lehmannianus (Fabaceae) is a vulnerable species found in the cold deserts of northwestern China. We aimed to characterize polymorphic microsatellite loci for A. lehmannianus to support future studies of population genetic dynamics and conservation management of the species. METHODS AND RESULTS: We used next‐generation sequencing to detect polymorphic microsatellites. Twenty‐five potential microsatellite loci were identified, 12 of which were polymorphic and present in the three study populations of A. lehmannianus. Levels of observed and expected heterozygosities were 0.000–1.000 and 0.000–0.827, respectively. Furthermore, two and five of the 12 developed primers were successfully amplified in two congeneric species, A. arpilobus and A. oxyglottis, respectively. CONCLUSIONS: These newly developed microsatellite markers can be used to determine population diversity and to develop conservation strategies in A. lehmannianus. John Wiley and Sons Inc. 2019-10-24 /pmc/articles/PMC6814180/ /pubmed/31667025 http://dx.doi.org/10.1002/aps3.11297 Text en © 2019 Wu et al. Applications in Plant Sciences is published by Wiley Periodicals, Inc. on behalf of the Botanical Society of America This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Primer Notes Wu, Mingying Shi, Xiaojun Tan, Dunyan Development of SSR markers for Astragalus lehmannianus, a vulnerable species from northwestern China |
title | Development of SSR markers for Astragalus lehmannianus, a vulnerable species from northwestern China |
title_full | Development of SSR markers for Astragalus lehmannianus, a vulnerable species from northwestern China |
title_fullStr | Development of SSR markers for Astragalus lehmannianus, a vulnerable species from northwestern China |
title_full_unstemmed | Development of SSR markers for Astragalus lehmannianus, a vulnerable species from northwestern China |
title_short | Development of SSR markers for Astragalus lehmannianus, a vulnerable species from northwestern China |
title_sort | development of ssr markers for astragalus lehmannianus, a vulnerable species from northwestern china |
topic | Primer Notes |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6814180/ https://www.ncbi.nlm.nih.gov/pubmed/31667025 http://dx.doi.org/10.1002/aps3.11297 |
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