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Development of SSR markers for Astragalus lehmannianus, a vulnerable species from northwestern China

PREMISE: Astragalus lehmannianus (Fabaceae) is a vulnerable species found in the cold deserts of northwestern China. We aimed to characterize polymorphic microsatellite loci for A. lehmannianus to support future studies of population genetic dynamics and conservation management of the species. METHO...

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Detalles Bibliográficos
Autores principales: Wu, Mingying, Shi, Xiaojun, Tan, Dunyan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6814180/
https://www.ncbi.nlm.nih.gov/pubmed/31667025
http://dx.doi.org/10.1002/aps3.11297
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author Wu, Mingying
Shi, Xiaojun
Tan, Dunyan
author_facet Wu, Mingying
Shi, Xiaojun
Tan, Dunyan
author_sort Wu, Mingying
collection PubMed
description PREMISE: Astragalus lehmannianus (Fabaceae) is a vulnerable species found in the cold deserts of northwestern China. We aimed to characterize polymorphic microsatellite loci for A. lehmannianus to support future studies of population genetic dynamics and conservation management of the species. METHODS AND RESULTS: We used next‐generation sequencing to detect polymorphic microsatellites. Twenty‐five potential microsatellite loci were identified, 12 of which were polymorphic and present in the three study populations of A. lehmannianus. Levels of observed and expected heterozygosities were 0.000–1.000 and 0.000–0.827, respectively. Furthermore, two and five of the 12 developed primers were successfully amplified in two congeneric species, A. arpilobus and A. oxyglottis, respectively. CONCLUSIONS: These newly developed microsatellite markers can be used to determine population diversity and to develop conservation strategies in A. lehmannianus.
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spelling pubmed-68141802019-10-30 Development of SSR markers for Astragalus lehmannianus, a vulnerable species from northwestern China Wu, Mingying Shi, Xiaojun Tan, Dunyan Appl Plant Sci Primer Notes PREMISE: Astragalus lehmannianus (Fabaceae) is a vulnerable species found in the cold deserts of northwestern China. We aimed to characterize polymorphic microsatellite loci for A. lehmannianus to support future studies of population genetic dynamics and conservation management of the species. METHODS AND RESULTS: We used next‐generation sequencing to detect polymorphic microsatellites. Twenty‐five potential microsatellite loci were identified, 12 of which were polymorphic and present in the three study populations of A. lehmannianus. Levels of observed and expected heterozygosities were 0.000–1.000 and 0.000–0.827, respectively. Furthermore, two and five of the 12 developed primers were successfully amplified in two congeneric species, A. arpilobus and A. oxyglottis, respectively. CONCLUSIONS: These newly developed microsatellite markers can be used to determine population diversity and to develop conservation strategies in A. lehmannianus. John Wiley and Sons Inc. 2019-10-24 /pmc/articles/PMC6814180/ /pubmed/31667025 http://dx.doi.org/10.1002/aps3.11297 Text en © 2019 Wu et al. Applications in Plant Sciences is published by Wiley Periodicals, Inc. on behalf of the Botanical Society of America This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Primer Notes
Wu, Mingying
Shi, Xiaojun
Tan, Dunyan
Development of SSR markers for Astragalus lehmannianus, a vulnerable species from northwestern China
title Development of SSR markers for Astragalus lehmannianus, a vulnerable species from northwestern China
title_full Development of SSR markers for Astragalus lehmannianus, a vulnerable species from northwestern China
title_fullStr Development of SSR markers for Astragalus lehmannianus, a vulnerable species from northwestern China
title_full_unstemmed Development of SSR markers for Astragalus lehmannianus, a vulnerable species from northwestern China
title_short Development of SSR markers for Astragalus lehmannianus, a vulnerable species from northwestern China
title_sort development of ssr markers for astragalus lehmannianus, a vulnerable species from northwestern china
topic Primer Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6814180/
https://www.ncbi.nlm.nih.gov/pubmed/31667025
http://dx.doi.org/10.1002/aps3.11297
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