Cargando…

An empirical assessment of a single family‐wide hybrid capture locus set at multiple evolutionary timescales in Asteraceae

PREMISE: Hybrid capture with high‐throughput sequencing (Hyb‐Seq) is a powerful tool for evolutionary studies. The applicability of an Asteraceae family‐specific Hyb‐Seq probe set and the outcomes of different phylogenetic analyses are investigated here. METHODS: Hyb‐Seq data from 112 Asteraceae sam...

Descripción completa

Detalles Bibliográficos
Autores principales:	Jones, Katy E., Fér, Tomáš, Schmickl, Roswitha E., Dikow, Rebecca B., Funk, Vicki A., Herrando‐Moraira, Sonia, Johnston, Paul R., Kilian, Norbert, Siniscalchi, Carolina M., Susanna, Alfonso, Slovák, Marek, Thapa, Ramhari, Watson, Linda E., Mandel, Jennifer R.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	John Wiley and Sons Inc. 2019
Materias:	Application Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6814182/ https://www.ncbi.nlm.nih.gov/pubmed/31667023 http://dx.doi.org/10.1002/aps3.11295

Ejemplares similares

A fully resolved backbone phylogeny reveals numerous dispersals and explosive diversifications throughout the history of Asteraceae
por: Mandel, Jennifer R., et al.
Publicado: (2019)

Development and characterization of microsatellite markers for Antennaria corymbosa (Asteraceae) and close relatives
por: Thapa, Ramhari, et al.
Publicado: (2019)

Phylogenomics Yields New Insight Into Relationships Within Vernonieae (Asteraceae)
por: Siniscalchi, Carolina M., et al.
Publicado: (2019)

Relative performance of customized and universal probe sets in target enrichment: A case study in subtribe Malinae
por: Ufimov, Roman, et al.
Publicado: (2021)

HybPhyloMaker: Target Enrichment Data Analysis From Raw Reads to Species Trees
por: Fér, Tomáš, et al.
Publicado: (2018)

How to Tackle Phylogenetic Discordance in Recent and Rapidly Radiating Groups? Developing a Workflow Using Loricaria (Asteraceae) as an Example
por: Kandziora, Martha, et al.
Publicado: (2022)

Climatic niche characteristics of native and invasive Lilium lancifolium
por: Herrando-Moraira, Sonia, et al.
Publicado: (2019)

The Uses of the Smartphone for Doctors: An Empirical Study from Samsung Medical Center
por: Choi, Jong Soo, et al.
Publicado: (2011)

Next-generation sampling: Pairing genomics with herbarium specimens provides species-level signal in Solidago (Asteraceae)(1)
por: Beck, James B., et al.
Publicado: (2015)

Generating segmentation masks of herbarium specimens and a data set for training segmentation models using deep learning
por: White, Alexander E., et al.
Publicado: (2020)

New Insights Into the Relationships Within Subtribe Scorzonerinae (Cichorieae, Asteraceae) Using Hybrid Capture Phylogenomics (Hyb-Seq)
por: Hatami, Elham, et al.
Publicado: (2022)

A new genus, Nothovernonia, from tropical Africa (Asteraceae or Compositae, Vernonieae)
por: Robinson, Harold, et al.
Publicado: (2011)

Dysaster cajamarcensis, a new shrubby genus and species of Astereae (Asteraceae) from Peru
por: Robinson, Harold, et al.
Publicado: (2014)

Lineage‐specific vs. universal: A comparison of the Compositae1061 and Angiosperms353 enrichment panels in the sunflower family
por: Siniscalchi, Carolina M., et al.
Publicado: (2021)

Two new species for Gochnatia Kunth (Asteraceae, Gochnatieae) and an extension of the tribal range into Ecuador
por: Robinson, Harold, et al.
Publicado: (2020)

Vernonieae (Asteraceae) of southern Africa: A generic disposition of the species and a study of their pollen
por: Robinson, Harold, et al.
Publicado: (2016)

GeneticsMakie.jl: a versatile and scalable toolkit for visualizing locus-level genetic and genomic data
por: Kim, Minsoo, et al.
Publicado: (2022)

Bidens meyeri (Asteraceae, Coreopsideae): a new critically endangered species from Rapa, Austral Islands
por: Funk, Vicki A., et al.
Publicado: (2014)

RAxML Grove: an empirical phylogenetic tree database
por: Höhler, Dimitri, et al.
Publicado: (2021)

Automated construction and testing of multi-locus gene–gene associations
por: Abo, Ryan, et al.
Publicado: (2011)

Typification of species names in Adenocaulon and Eriachaenium (Compositae/Asteraceae, Subfamily Mutisioideae, Tribe Mutisieae, Subtribe Adenocaulinae)
por: Funk, Vicki A., et al.
Publicado: (2016)

Home at Last II: Gerbera hieracioides (Kunth) Zardini (Mutisieae, Asteraceae) is really a Chaptalia
por: Xu, Xiaodan, et al.
Publicado: (2018)

Automated selection of changepoints using empirical P-values and trimming
por: Quinn, Matthew, et al.
Publicado: (2022)

Implementation of a data control framework to ensure confidentiality, integrity, and availability of high-quality real-world data (RWD) in the NeuroTransData (NTD) registry
por: Wehrle, Knut, et al.
Publicado: (2022)

LocusZoom: regional visualization of genome-wide association scan results
por: Pruim, Randall J., et al.
Publicado: (2010)

Clinical decision support alert malfunctions: analysis and empirically derived taxonomy
por: Wright, Adam, et al.
Publicado: (2017)

LocusZoom.js: interactive and embeddable visualization of genetic association study results
por: Boughton, Andrew P, et al.
Publicado: (2021)

1LocusSim a mobile-friendly simulator for teaching population genetics
por: Carvajal-Rodríguez, Antonio
Publicado: (2023)

EFMDR-Fast: An Application of Empirical Fuzzy Multifactor Dimensionality Reduction for Fast Execution
por: Leem, Sangseob, et al.
Publicado: (2018)

New targets acquired: Improving locus recovery from the Angiosperms353 probe set
por: McLay, Todd G. B., et al.
Publicado: (2021)

An integrative pipeline for circular RNA quantitative trait locus discovery with application in human T cells
por: Nguyen, Dat Thanh
Publicado: (2023)

Comparison of taxon‐specific versus general locus sets for targeted sequence capture in plant phylogenomics
por: Chau, John H., et al.
Publicado: (2018)

MSMS: a coalescent simulation program including recombination, demographic structure and selection at a single locus
por: Ewing, Gregory, et al.
Publicado: (2010)

LocusExplorer: a user-friendly tool for integrated visualization of human genetic association data and biological annotations
por: Dadaev, Tokhir, et al.
Publicado: (2016)

mrMLM v4.0.2: An R Platform for Multi-locus Genome-wide Association Studies
por: Zhang, Ya-Wen, et al.
Publicado: (2020)

FastPval: a fast and memory efficient program to calculate very low P-values from empirical distribution
por: Li, Mulin Jun, et al.
Publicado: (2010)

Growth form evolution and hybridization in Senecio (Asteraceae) from the high equatorial Andes
por: Dušková, Eva, et al.
Publicado: (2017)

Conference on the Evolution of Galaxies on Cosmological Timescales
por: Beckman, J E, et al.
Publicado: (1998)

A protocol for targeted enrichment of intron-containing sequence markers for recent radiations: A phylogenomic example from Heuchera (Saxifragaceae)(1)
por: Folk, Ryan A., et al.
Publicado: (2015)

Scorzonera sensu lato (Asteraceae, Cichorieae) – taxonomic reassessment in the light of new molecular phylogenetic and carpological analyses
por: Zaika, Maxim A., et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_biii1o81mki61pajs4a3opuav8