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Environmental transcriptomes of invasive dreissena, a model species in ecotoxicology and invasion biology
Dreissenids are established model species for ecological and ecotoxicological studies, since they are sessile and filter feeder organisms and reflect in situ freshwater quality. Despite this strong interest for hydrosystem biomonitoring, omics data are still scarce. In the present study, we achieved...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6814772/ https://www.ncbi.nlm.nih.gov/pubmed/31653851 http://dx.doi.org/10.1038/s41597-019-0252-x |
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author | Péden, Romain Poupin, Pascal Sohm, Bénédicte Flayac, Justine Giambérini, Laure Klopp, Christophe Louis, Fanny Pain-Devin, Sandrine Potet, Marine Serre, Rémy-Félix Devin, Simon |
author_facet | Péden, Romain Poupin, Pascal Sohm, Bénédicte Flayac, Justine Giambérini, Laure Klopp, Christophe Louis, Fanny Pain-Devin, Sandrine Potet, Marine Serre, Rémy-Félix Devin, Simon |
author_sort | Péden, Romain |
collection | PubMed |
description | Dreissenids are established model species for ecological and ecotoxicological studies, since they are sessile and filter feeder organisms and reflect in situ freshwater quality. Despite this strong interest for hydrosystem biomonitoring, omics data are still scarce. In the present study, we achieved full de novo assembly transcriptomes of digestive glands to gain insight into Dreissena polymorpha and D. rostriformis bugensis molecular knowledge. Transcriptomes were obtained by Illumina RNA sequencing of seventy-nine organisms issued from fifteen populations inhabiting sites that exhibits multiple freshwater contamination levels and different hydrosystem topographies (open or closed systems). Based on a recent de novo assembly algorithm, we carried out a complete, quality-checked and annotated transcriptomes. The power of the present study lies in the completeness of transcriptomes gathering multipopulational organisms sequencing and its full availability through an open access interface that gives a friendly and ready-to-use access to data. The use of such data for proteogenomic and targeted biological pathway investigations purpose is promising as they are first full transcriptomes for this two Dreissena species. |
format | Online Article Text |
id | pubmed-6814772 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-68147722019-10-30 Environmental transcriptomes of invasive dreissena, a model species in ecotoxicology and invasion biology Péden, Romain Poupin, Pascal Sohm, Bénédicte Flayac, Justine Giambérini, Laure Klopp, Christophe Louis, Fanny Pain-Devin, Sandrine Potet, Marine Serre, Rémy-Félix Devin, Simon Sci Data Data Descriptor Dreissenids are established model species for ecological and ecotoxicological studies, since they are sessile and filter feeder organisms and reflect in situ freshwater quality. Despite this strong interest for hydrosystem biomonitoring, omics data are still scarce. In the present study, we achieved full de novo assembly transcriptomes of digestive glands to gain insight into Dreissena polymorpha and D. rostriformis bugensis molecular knowledge. Transcriptomes were obtained by Illumina RNA sequencing of seventy-nine organisms issued from fifteen populations inhabiting sites that exhibits multiple freshwater contamination levels and different hydrosystem topographies (open or closed systems). Based on a recent de novo assembly algorithm, we carried out a complete, quality-checked and annotated transcriptomes. The power of the present study lies in the completeness of transcriptomes gathering multipopulational organisms sequencing and its full availability through an open access interface that gives a friendly and ready-to-use access to data. The use of such data for proteogenomic and targeted biological pathway investigations purpose is promising as they are first full transcriptomes for this two Dreissena species. Nature Publishing Group UK 2019-10-25 /pmc/articles/PMC6814772/ /pubmed/31653851 http://dx.doi.org/10.1038/s41597-019-0252-x Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files associated with this article. |
spellingShingle | Data Descriptor Péden, Romain Poupin, Pascal Sohm, Bénédicte Flayac, Justine Giambérini, Laure Klopp, Christophe Louis, Fanny Pain-Devin, Sandrine Potet, Marine Serre, Rémy-Félix Devin, Simon Environmental transcriptomes of invasive dreissena, a model species in ecotoxicology and invasion biology |
title | Environmental transcriptomes of invasive dreissena, a model species in ecotoxicology and invasion biology |
title_full | Environmental transcriptomes of invasive dreissena, a model species in ecotoxicology and invasion biology |
title_fullStr | Environmental transcriptomes of invasive dreissena, a model species in ecotoxicology and invasion biology |
title_full_unstemmed | Environmental transcriptomes of invasive dreissena, a model species in ecotoxicology and invasion biology |
title_short | Environmental transcriptomes of invasive dreissena, a model species in ecotoxicology and invasion biology |
title_sort | environmental transcriptomes of invasive dreissena, a model species in ecotoxicology and invasion biology |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6814772/ https://www.ncbi.nlm.nih.gov/pubmed/31653851 http://dx.doi.org/10.1038/s41597-019-0252-x |
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