Cargando…

Identification of prognosis‐related alternative splicing events in kidney renal clear cell carcinoma

Alternative splicing (AS) contributes to protein diversity by modifying most gene transcriptions. Cancer generation and progression are associated with specific splicing events. However, AS signature in kidney renal clear cell carcinoma (KIRC) remains unknown. In this study, genome‐wide AS profiles...

Descripción completa

Detalles Bibliográficos
Autores principales: Zuo, Yongdi, Zhang, Liang, Tang, Weihao, Tang, Wanxin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6815842/
https://www.ncbi.nlm.nih.gov/pubmed/31489763
http://dx.doi.org/10.1111/jcmm.14651
_version_ 1783463265455570944
author Zuo, Yongdi
Zhang, Liang
Tang, Weihao
Tang, Wanxin
author_facet Zuo, Yongdi
Zhang, Liang
Tang, Weihao
Tang, Wanxin
author_sort Zuo, Yongdi
collection PubMed
description Alternative splicing (AS) contributes to protein diversity by modifying most gene transcriptions. Cancer generation and progression are associated with specific splicing events. However, AS signature in kidney renal clear cell carcinoma (KIRC) remains unknown. In this study, genome‐wide AS profiles were generated in 537 patients with KIRC in the cancer genome atlas. With a total of 42 522 mRNA AS events in 10 600 genes acquired, 8164 AS events were significantly associated with the survival of patients with KIRC. Logistic regression analysis of the least absolute shrinkage and selection operator was conducted to identify an optimized multivariate prognostic predicting mode containing four predictors. In this model, the receptor‐operator characteristic curves of the training set were built, and the areas under the curves (AUCs) at different times were >0.88, thus indicating a stable and powerful ability in distinguishing patients' outcome. Similarly, the AUCs of the test set at different times were >0.73, verifying the results of the training set. Correlation and gene ontology analyses revealed some potential functions of prognostic AS events. This study provided an optimized survival‐predicting model and promising data resources for future in‐depth studies on AS mechanisms in KIRC.
format Online
Article
Text
id pubmed-6815842
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-68158422019-11-01 Identification of prognosis‐related alternative splicing events in kidney renal clear cell carcinoma Zuo, Yongdi Zhang, Liang Tang, Weihao Tang, Wanxin J Cell Mol Med Original Articles Alternative splicing (AS) contributes to protein diversity by modifying most gene transcriptions. Cancer generation and progression are associated with specific splicing events. However, AS signature in kidney renal clear cell carcinoma (KIRC) remains unknown. In this study, genome‐wide AS profiles were generated in 537 patients with KIRC in the cancer genome atlas. With a total of 42 522 mRNA AS events in 10 600 genes acquired, 8164 AS events were significantly associated with the survival of patients with KIRC. Logistic regression analysis of the least absolute shrinkage and selection operator was conducted to identify an optimized multivariate prognostic predicting mode containing four predictors. In this model, the receptor‐operator characteristic curves of the training set were built, and the areas under the curves (AUCs) at different times were >0.88, thus indicating a stable and powerful ability in distinguishing patients' outcome. Similarly, the AUCs of the test set at different times were >0.73, verifying the results of the training set. Correlation and gene ontology analyses revealed some potential functions of prognostic AS events. This study provided an optimized survival‐predicting model and promising data resources for future in‐depth studies on AS mechanisms in KIRC. John Wiley and Sons Inc. 2019-09-05 2019-11 /pmc/articles/PMC6815842/ /pubmed/31489763 http://dx.doi.org/10.1111/jcmm.14651 Text en © 2019 The Authors. Journal of Cellular and Molecular Medicine published by John Wiley & Sons Ltd and Foundation for Cellular and Molecular Medicine. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
Zuo, Yongdi
Zhang, Liang
Tang, Weihao
Tang, Wanxin
Identification of prognosis‐related alternative splicing events in kidney renal clear cell carcinoma
title Identification of prognosis‐related alternative splicing events in kidney renal clear cell carcinoma
title_full Identification of prognosis‐related alternative splicing events in kidney renal clear cell carcinoma
title_fullStr Identification of prognosis‐related alternative splicing events in kidney renal clear cell carcinoma
title_full_unstemmed Identification of prognosis‐related alternative splicing events in kidney renal clear cell carcinoma
title_short Identification of prognosis‐related alternative splicing events in kidney renal clear cell carcinoma
title_sort identification of prognosis‐related alternative splicing events in kidney renal clear cell carcinoma
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6815842/
https://www.ncbi.nlm.nih.gov/pubmed/31489763
http://dx.doi.org/10.1111/jcmm.14651
work_keys_str_mv AT zuoyongdi identificationofprognosisrelatedalternativesplicingeventsinkidneyrenalclearcellcarcinoma
AT zhangliang identificationofprognosisrelatedalternativesplicingeventsinkidneyrenalclearcellcarcinoma
AT tangweihao identificationofprognosisrelatedalternativesplicingeventsinkidneyrenalclearcellcarcinoma
AT tangwanxin identificationofprognosisrelatedalternativesplicingeventsinkidneyrenalclearcellcarcinoma