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Identification of prognosis‐related alternative splicing events in kidney renal clear cell carcinoma
Alternative splicing (AS) contributes to protein diversity by modifying most gene transcriptions. Cancer generation and progression are associated with specific splicing events. However, AS signature in kidney renal clear cell carcinoma (KIRC) remains unknown. In this study, genome‐wide AS profiles...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6815842/ https://www.ncbi.nlm.nih.gov/pubmed/31489763 http://dx.doi.org/10.1111/jcmm.14651 |
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author | Zuo, Yongdi Zhang, Liang Tang, Weihao Tang, Wanxin |
author_facet | Zuo, Yongdi Zhang, Liang Tang, Weihao Tang, Wanxin |
author_sort | Zuo, Yongdi |
collection | PubMed |
description | Alternative splicing (AS) contributes to protein diversity by modifying most gene transcriptions. Cancer generation and progression are associated with specific splicing events. However, AS signature in kidney renal clear cell carcinoma (KIRC) remains unknown. In this study, genome‐wide AS profiles were generated in 537 patients with KIRC in the cancer genome atlas. With a total of 42 522 mRNA AS events in 10 600 genes acquired, 8164 AS events were significantly associated with the survival of patients with KIRC. Logistic regression analysis of the least absolute shrinkage and selection operator was conducted to identify an optimized multivariate prognostic predicting mode containing four predictors. In this model, the receptor‐operator characteristic curves of the training set were built, and the areas under the curves (AUCs) at different times were >0.88, thus indicating a stable and powerful ability in distinguishing patients' outcome. Similarly, the AUCs of the test set at different times were >0.73, verifying the results of the training set. Correlation and gene ontology analyses revealed some potential functions of prognostic AS events. This study provided an optimized survival‐predicting model and promising data resources for future in‐depth studies on AS mechanisms in KIRC. |
format | Online Article Text |
id | pubmed-6815842 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-68158422019-11-01 Identification of prognosis‐related alternative splicing events in kidney renal clear cell carcinoma Zuo, Yongdi Zhang, Liang Tang, Weihao Tang, Wanxin J Cell Mol Med Original Articles Alternative splicing (AS) contributes to protein diversity by modifying most gene transcriptions. Cancer generation and progression are associated with specific splicing events. However, AS signature in kidney renal clear cell carcinoma (KIRC) remains unknown. In this study, genome‐wide AS profiles were generated in 537 patients with KIRC in the cancer genome atlas. With a total of 42 522 mRNA AS events in 10 600 genes acquired, 8164 AS events were significantly associated with the survival of patients with KIRC. Logistic regression analysis of the least absolute shrinkage and selection operator was conducted to identify an optimized multivariate prognostic predicting mode containing four predictors. In this model, the receptor‐operator characteristic curves of the training set were built, and the areas under the curves (AUCs) at different times were >0.88, thus indicating a stable and powerful ability in distinguishing patients' outcome. Similarly, the AUCs of the test set at different times were >0.73, verifying the results of the training set. Correlation and gene ontology analyses revealed some potential functions of prognostic AS events. This study provided an optimized survival‐predicting model and promising data resources for future in‐depth studies on AS mechanisms in KIRC. John Wiley and Sons Inc. 2019-09-05 2019-11 /pmc/articles/PMC6815842/ /pubmed/31489763 http://dx.doi.org/10.1111/jcmm.14651 Text en © 2019 The Authors. Journal of Cellular and Molecular Medicine published by John Wiley & Sons Ltd and Foundation for Cellular and Molecular Medicine. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Articles Zuo, Yongdi Zhang, Liang Tang, Weihao Tang, Wanxin Identification of prognosis‐related alternative splicing events in kidney renal clear cell carcinoma |
title | Identification of prognosis‐related alternative splicing events in kidney renal clear cell carcinoma |
title_full | Identification of prognosis‐related alternative splicing events in kidney renal clear cell carcinoma |
title_fullStr | Identification of prognosis‐related alternative splicing events in kidney renal clear cell carcinoma |
title_full_unstemmed | Identification of prognosis‐related alternative splicing events in kidney renal clear cell carcinoma |
title_short | Identification of prognosis‐related alternative splicing events in kidney renal clear cell carcinoma |
title_sort | identification of prognosis‐related alternative splicing events in kidney renal clear cell carcinoma |
topic | Original Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6815842/ https://www.ncbi.nlm.nih.gov/pubmed/31489763 http://dx.doi.org/10.1111/jcmm.14651 |
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