Cargando…

Interbase FRET in RNA: from A to Z

Interbase FRET can reveal highly detailed information about distance, orientation and dynamics in nucleic acids, complementing the existing structure and dynamics techniques. We here report the first RNA base analogue FRET pair, consisting of the donor tC(O) and the non-emissive acceptor tC(nitro)....

Descripción completa

Detalles Bibliográficos
Autores principales:	Füchtbauer, Anders F, Wranne, Moa S, Bood, Mattias, Weis, Erik, Pfeiffer, Pauline, Nilsson, Jesper R, Dahlén, Anders, Grøtli, Morten, Wilhelmsson, L Marcus
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2019
Materias:	Chemical Biology and Nucleic Acid Chemistry
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6821158/ https://www.ncbi.nlm.nih.gov/pubmed/31544922 http://dx.doi.org/10.1093/nar/gkz812

Ejemplares similares

Getting DNA and RNA out of the dark with 2CNqA: a bright adenine analogue and interbase FRET donor
por: Wypijewska del Nogal, Anna, et al.
Publicado: (2020)

Interbase-FRET binding assay for pre-microRNAs
por: Bood, Mattias, et al.
Publicado: (2021)

Fluorescent nucleobase analogues for base–base FRET in nucleic acids: synthesis, photophysics and applications
por: Bood, Mattias, et al.
Publicado: (2018)

Development of bright fluorescent quadracyclic adenine analogues: TDDFT-calculation supported rational design
por: Foller Larsen, Anders, et al.
Publicado: (2015)

Pentacyclic adenine: a versatile and exceptionally bright fluorescent DNA base analogue
por: Bood, Mattias, et al.
Publicado: (2018)

Synthesis, oligonucleotide incorporation and fluorescence properties in DNA of a bicyclic thymine analogue
por: Lawson, Christopher P., et al.
Publicado: (2018)

Sequence-dependent cost for Z-form shapes the torsion-driven B–Z transition via close interplay of Z-DNA and DNA bubble
por: Kim, Sook Ho, et al.
Publicado: (2021)

Interbase server 5.0 /
por: Morales Cristobal, Pedro
Publicado: (2002)

Studying Z-DNA and B- to Z-DNA transitions using a cytosine analogue FRET-pair
por: Dumat, Blaise, et al.
Publicado: (2016)

Unveiling the pathway to Z-DNA in the protein-induced B–Z transition
por: Kim, Sook Ho, et al.
Publicado: (2018)

Oligonucleotides DNA containing 8-trifluoromethyl-2′-deoxyguanosine for observing Z-DNA structure
por: Bao, Hong-Liang, et al.
Publicado: (2020)

Novel eGZ-motif formed by regularly extruded guanine bases in a left-handed Z-DNA helix as a major motif behind CGG trinucleotide repeats
por: Fakharzadeh, Ashkan, et al.
Publicado: (2022)

Yeast mitochondrial RNase P, RNase Z and the RNA degradosome are part of a stable supercomplex
por: Daoud, Rachid, et al.
Publicado: (2012)

The H-subunit of the restriction endonuclease CglI contains a prototype DEAD-Z1 helicase-like motor
por: Toliusis, Paulius, et al.
Publicado: (2018)

Conformations of Flanking Bases in HIV-1 RNA DIS Kissing Complexes Studied by Molecular Dynamics
por: Réblová, Kamila, et al.
Publicado: (2007)

Components of variance in transcriptomics based on electrophoretic separation of cDNA fragments (cDNA-AFLP)
por: Weiberg, Arne, et al.
Publicado: (2009)

RNA pseudoknots
por: Westhof, Eric, et al.
Publicado: (1992)

Isometric artifacts from polymerase chain reaction‐massively parallel sequencing analysis of short tandem repeat loci: An emerging issue from a new technology?
por: Zupanič Pajnič, Irena, et al.
Publicado: (2022)

Subtle structural alterations in G-quadruplex DNA regulate site specificity of fluorescence light-up probes
por: Kumar, Rajendra, et al.
Publicado: (2020)

The N-terminal domain of TWINKLE contributes to single-stranded DNA binding and DNA helicase activities
por: Farge, Géraldine, et al.
Publicado: (2008)

The ATP-mediated formation of the YgjD–YeaZ–YjeE complex is required for the biosynthesis of tRNA t(6)A in Escherichia coli
por: Zhang, Wenhua, et al.
Publicado: (2015)

Next-generation bis-locked nucleic acids with stacking linker and 2′-glycylamino-LNA show enhanced DNA invasion into supercoiled duplexes
por: Geny, Sylvain, et al.
Publicado: (2016)

In vitro and in vivo properties of therapeutic oligonucleotides containing non-chiral 3′ and 5′ thiophosphate linkages
por: Duschmalé, Jörg, et al.
Publicado: (2020)

miR-122 does not impact recognition of the HCV genome by innate sensors of RNA but rather protects the 5′ end from the cellular pyrophosphatases, DOM3Z and DUSP11
por: Amador-Cañizares, Yalena, et al.
Publicado: (2018)

Small-molecule affinity capture of DNA/RNA quadruplexes and their identification in vitro and in vivo through the G4RP protocol
por: Renard, Isaline, et al.
Publicado: (2019)

Identifying and avoiding off-target effects of RNase H-dependent antisense oligonucleotides in mice
por: Hagedorn, Peter H, et al.
Publicado: (2018)

Dissecting the chemical interactions and substrate structural signatures governing RNA polymerase II trigger loop closure by synthetic nucleic acid analogues
por: Xu, Liang, et al.
Publicado: (2014)

RNase H sequence preferences influence antisense oligonucleotide efficiency
por: Kiełpiński, Łukasz J., et al.
Publicado: (2017)

Limited reverse transcriptase activity of phi29 DNA polymerase
por: Krzywkowski, Tomasz, et al.
Publicado: (2018)

Functional characterization of Rad18 domains for Rad6, ubiquitin, DNA binding and PCNA modification
por: Notenboom, Valerie, et al.
Publicado: (2007)

Bacteriophage DNA glucosylation impairs target DNA binding by type I and II but not by type V CRISPR–Cas effector complexes
por: Vlot, Marnix, et al.
Publicado: (2018)

Unwinding of primer-templates by archaeal family-B DNA polymerases in response to template-strand uracil
por: Richardson, Tomas T., et al.
Publicado: (2013)

The Pif1 signature motif of Pfh1 is necessary for both protein displacement and helicase unwinding activities, but is dispensable for strand-annealing activity
por: Mohammad, Jani B, et al.
Publicado: (2018)

Binding dynamics of a monomeric SSB protein to DNA: a single-molecule multi-process approach
por: Morten, Michael J., et al.
Publicado: (2015)

Temperature controlled high-throughput magnetic tweezers show striking difference in activation energies of replicating viral RNA-dependent RNA polymerases
por: Seifert, Mona, et al.
Publicado: (2020)

Mammalian RNase H1 directs RNA primer formation for mtDNA replication initiation and is also necessary for mtDNA replication completion
por: Misic, Jelena, et al.
Publicado: (2022)

Human 2′-phosphodiesterase localizes to the mitochondrial matrix with a putative function in mitochondrial RNA turnover
por: Poulsen, Jesper Buchhave, et al.
Publicado: (2011)

Mechanism of allosteric activation of human mRNA cap methyltransferase (RNMT) by RAM: insights from accelerated molecular dynamics simulations
por: Bueren-Calabuig, Juan A, et al.
Publicado: (2019)

Alteration in the cavity size adjacent to the active site of RB69 DNA polymerase changes its conformational dynamics
por: Xia, Shuangluo, et al.
Publicado: (2013)

Negative regulation of mitochondrial transcription by mitochondrial topoisomerase I
por: Sobek, Stefan, et al.
Publicado: (2013)

Cannot write session to /tmp/vufind_sessions/sess_uicqmdknt9ljj9jk1o1pk04eja