Cargando…

PatientExploreR: an extensible application for dynamic visualization of patient clinical history from electronic health records in the OMOP common data model

MOTIVATION: Electronic health records (EHRs) are quickly becoming omnipresent in healthcare, but interoperability issues and technical demands limit their use for biomedical and clinical research. Interactive and flexible software that interfaces directly with EHR data structured around a common dat...

Descripción completa

Detalles Bibliográficos
Autores principales:	Glicksberg, Benjamin S, Oskotsky, Boris, Thangaraj, Phyllis M, Giangreco, Nicholas, Badgeley, Marcus A, Johnson, Kipp W, Datta, Debajyoti, Rudrapatna, Vivek A, Rappoport, Nadav, Shervey, Mark M, Miotto, Riccardo, Goldstein, Theodore C, Rutenberg, Eugenia, Frazier, Remi, Lee, Nelson, Israni, Sharat, Larsen, Rick, Percha, Bethany, Li, Li, Dudley, Joel T, Tatonetti, Nicholas P, Butte, Atul J
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2019
Materias:	Applications Notes
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6821222/ https://www.ncbi.nlm.nih.gov/pubmed/31214700 http://dx.doi.org/10.1093/bioinformatics/btz409

Ejemplares similares

ROMOP: a light-weight R package for interfacing with OMOP-formatted electronic health record data
por: Glicksberg, Benjamin S, et al.
Publicado: (2019)

A certified de-identification system for all clinical text documents for information extraction at scale
por: Radhakrishnan, Lakshmi, et al.
Publicado: (2023)

Utility of routinely collected electronic health records data to support effectiveness evaluations in inflammatory bowel disease: a pilot study of tofacitinib
por: Rudrapatna, Vivek Ashok, et al.
Publicado: (2021)

Evaluating risk detection methods to uncover ontogenic-mediated adverse drug effect mechanisms in children
por: Giangreco, Nicholas P., et al.
Publicado: (2021)

CANDI: an R package and Shiny app for annotating radiographs and evaluating computer-aided diagnosis
por: Badgeley, Marcus A, et al.
Publicado: (2019)

Deep learning predicts hip fracture using confounding patient and healthcare variables
por: Badgeley, Marcus A., et al.
Publicado: (2019)

FHIR-Ontop-OMOP: Building clinical knowledge graphs in FHIR RDF with the OMOP Common data Model
por: Xiao, Guohui, et al.
Publicado: (2022)

No population left behind: Improving paediatric drug safety using informatics and systems biology
por: Giangreco, Nicholas P., et al.
Publicado: (2021)

An integrative method for scoring candidate genes from association studies: application to warfarin dosing
por: Tatonetti, Nicholas P, et al.
Publicado: (2010)

Comparative analysis, applications, and interpretation of electronic health record-based stroke phenotyping methods
por: Thangaraj, Phyllis M., et al.
Publicado: (2020)

Translational bioinformatics in the era of real-time biomedical, health care and wellness data streams
por: Shameer, Khader, et al.
Publicado: (2017)

Protected Health Information filter (Philter): accurately and securely de-identifying free-text clinical notes
por: Norgeot, Beau, et al.
Publicado: (2020)

Accuracy of medical billing data against the electronic health record in the measurement of colorectal cancer screening rates
por: Rudrapatna, Vivek A, et al.
Publicado: (2020)

Identification of Immune complement function as a determinant of adverse SARS-CoV-2 infection outcome
por: Ramlall, Vijendra, et al.
Publicado: (2020)

Sleep in the Natural Environment: A Pilot Study
por: Chaudhry, Fayzan F., et al.
Publicado: (2020)

CovidCounties - an interactive, real-time tracker of the COVID-19 pandemic at the level of US counties
por: Arneson, Douglas, et al.
Publicado: (2020)

Identifying Acute Low Back Pain Episodes in Primary Care Practice From Clinical Notes: Observational Study
por: Miotto, Riccardo, et al.
Publicado: (2020)

Towards Implementation of OMOP in a German University Hospital Consortium
por: Maier, C., et al.
Publicado: (2018)

EHR-Independent Predictive Decision Support Architecture Based on OMOP
por: Unberath, Philipp, et al.
Publicado: (2020)

Extract, transform, load framework for the conversion of health databases to OMOP
por: Quiroz, Juan C., et al.
Publicado: (2022)

Assessment of a Deep Learning Model Based on Electronic Health Record Data to Forecast Clinical Outcomes in Patients With Rheumatoid Arthritis
por: Norgeot, Beau, et al.
Publicado: (2019)

CovidCounties is an interactive real time tracker of the COVID19 pandemic at the level of US counties
por: Arneson, Douglas, et al.
Publicado: (2020)

An OMOP CDM-Based Relational Database of Clinical Research Eligibility Criteria
por: Si, Yuqi, et al.
Publicado: (2017)

Analysis of treatment pathways for three chronic diseases using OMOP CDM
por: Zhang, Xin, et al.
Publicado: (2018)

Conversion of Automated 12-Lead Electrocardiogram Interpretations to OMOP CDM Vocabulary
por: Choi, Sunho, et al.
Publicado: (2022)

Exploring the potential of OMOP common data model for process mining in healthcare
por: Park, Kangah, et al.
Publicado: (2023)

Systematic analyses of drugs and disease indications in RepurposeDB reveal pharmacological, biological and epidemiological factors influencing drug repositioning
por: Shameer, Khader, et al.
Publicado: (2017)

Web services for data warehouses: OMOP and PCORnet on i2b2
por: Klann, Jeffrey G, et al.
Publicado: (2018)

Feasibility of Mapping Austrian Health Claims Data to the OMOP Common Data Model
por: Haberson, Andrea, et al.
Publicado: (2019)

Predictive Modelling of Susceptibility to Substance Abuse, Mortality and Drug-Drug Interactions in Opioid Patients
por: Vunikili, Ramya, et al.
Publicado: (2021)

Extending the OMOP Common Data Model and Standardized Vocabularies to Support Observational Cancer Research
por: Belenkaya, Rimma, et al.
Publicado: (2021)

Transformation and Evaluation of the MIMIC Database in the OMOP Common Data Model: Development and Usability Study
por: Paris, Nicolas, et al.
Publicado: (2021)

Perceived Risk of Re-Identification in OMOP-CDM Database: A Cross-Sectional Survey
por: Tak, Yae Won, et al.
Publicado: (2022)

Feasibility Study of Federated Learning on the Distributed Research Network of OMOP Common Data Model
por: Lee, Geun Hyeong, et al.
Publicado: (2023)

Automated electrocardiogram signal quality assessment based on Fourier analysis and template matching
por: Menon, Kartikeya M., et al.
Publicado: (2022)

EHDViz: clinical dashboard development using open-source technologies
por: Badgeley, Marcus A, et al.
Publicado: (2016)

ALK Inhibitor Treatment Patterns and Outcomes in Real-World Patients with ALK-Positive Non-Small-Cell Lung Cancer: A Retrospective Cohort Study
por: Wang, Michelle, et al.
Publicado: (2023)

Systematic identification of ACE2 expression modulators reveals cardiomyopathy as a risk factor for mortality in COVID-19 patients
por: Kaur, Navchetan, et al.
Publicado: (2022)

Fidelity Assessment of a Clinical Practice Research Datalink Conversion to the OMOP Common Data Model
por: Matcho, Amy, et al.
Publicado: (2014)

Evaluating the performance of temporal pattern discovery: new application using statins and rhabdomyolysis in OMOP databases
por: Lavallee, M., et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_cc0pq0beo66l1o422bbr7e48pt