INDRA-IPM: interactive pathway modeling using natural language with automated assembly

SUMMARY: INDRA-IPM (Interactive Pathway Map) is a web-based pathway map modeling tool that combines natural language processing with automated model assembly and visualization. INDRA-IPM contextualizes models with expression data and exports them to standard formats. AVAILABILITY AND IMPLEMENTATION:...

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Detalles Bibliográficos
Autores principales: Todorov, Petar V, Gyori, Benjamin M, Bachman, John A, Sorger, Peter K
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6821420/
https://www.ncbi.nlm.nih.gov/pubmed/31070726
http://dx.doi.org/10.1093/bioinformatics/btz289
Descripción
Sumario:SUMMARY: INDRA-IPM (Interactive Pathway Map) is a web-based pathway map modeling tool that combines natural language processing with automated model assembly and visualization. INDRA-IPM contextualizes models with expression data and exports them to standard formats. AVAILABILITY AND IMPLEMENTATION: INDRA-IPM is available at: http://pathwaymap.indra.bio. Source code is available at http://github.com/sorgerlab/indra_pathway_map. The underlying web service API is available at http://api.indra.bio:8000. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

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