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Defining phylogenetic relationship of Nepeta x tmolea and its parents via DNA barcoding

Abstract. Nepeta viscida and N. nuda subsp. nuda and N. × tmolea were examined in this study. Mainly fresh leaf pieces, dried with silica grains, were used for DNA extraction procedures via DNA isolation kits. Standard PCR techniques were executed using three different primer sets (one nuclear DNA r...

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Autor principal: Özcan, Taner
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Pensoft Publishers 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6821826/
https://www.ncbi.nlm.nih.gov/pubmed/31686955
http://dx.doi.org/10.3897/phytokeys.134.38238
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author Özcan, Taner
author_facet Özcan, Taner
author_sort Özcan, Taner
collection PubMed
description Abstract. Nepeta viscida and N. nuda subsp. nuda and N. × tmolea were examined in this study. Mainly fresh leaf pieces, dried with silica grains, were used for DNA extraction procedures via DNA isolation kits. Standard PCR techniques were executed using three different primer sets (one nuclear DNA region (nrITS) and two chloroplast DNA regions (rpl32-trnL and trnA(Leu)-trnA(Phe)-trnL-F). DNA sequences were analysed and evaluated using different molecular approaches and software. Consequently, the inconstant molecular structure and hybrid nature of N. × tmolea specimens were shown and interpreted in this study. According to our result, N. × tmolea have some intermediate characters compared to its parents. nrITS data give more information phylogenetically, and also the most polymorphic loci are seen in nrITS data. Morphological and molecular data contribute to define separation of N. × tmolea. Consequently, the inconstant molecular structure and hybrid nature of N. × tmolea specimens were shown and interpreted in this study.
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spelling pubmed-68218262019-11-04 Defining phylogenetic relationship of Nepeta x tmolea and its parents via DNA barcoding Özcan, Taner PhytoKeys Research Article Abstract. Nepeta viscida and N. nuda subsp. nuda and N. × tmolea were examined in this study. Mainly fresh leaf pieces, dried with silica grains, were used for DNA extraction procedures via DNA isolation kits. Standard PCR techniques were executed using three different primer sets (one nuclear DNA region (nrITS) and two chloroplast DNA regions (rpl32-trnL and trnA(Leu)-trnA(Phe)-trnL-F). DNA sequences were analysed and evaluated using different molecular approaches and software. Consequently, the inconstant molecular structure and hybrid nature of N. × tmolea specimens were shown and interpreted in this study. According to our result, N. × tmolea have some intermediate characters compared to its parents. nrITS data give more information phylogenetically, and also the most polymorphic loci are seen in nrITS data. Morphological and molecular data contribute to define separation of N. × tmolea. Consequently, the inconstant molecular structure and hybrid nature of N. × tmolea specimens were shown and interpreted in this study. Pensoft Publishers 2019-10-23 /pmc/articles/PMC6821826/ /pubmed/31686955 http://dx.doi.org/10.3897/phytokeys.134.38238 Text en Taner Özcan http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Özcan, Taner
Defining phylogenetic relationship of Nepeta x tmolea and its parents via DNA barcoding
title Defining phylogenetic relationship of Nepeta x tmolea and its parents via DNA barcoding
title_full Defining phylogenetic relationship of Nepeta x tmolea and its parents via DNA barcoding
title_fullStr Defining phylogenetic relationship of Nepeta x tmolea and its parents via DNA barcoding
title_full_unstemmed Defining phylogenetic relationship of Nepeta x tmolea and its parents via DNA barcoding
title_short Defining phylogenetic relationship of Nepeta x tmolea and its parents via DNA barcoding
title_sort defining phylogenetic relationship of nepeta x tmolea and its parents via dna barcoding
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6821826/
https://www.ncbi.nlm.nih.gov/pubmed/31686955
http://dx.doi.org/10.3897/phytokeys.134.38238
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