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Artificial intelligence deep learning algorithm for discriminating ungradable optical coherence tomography three-dimensional volumetric optic disc scans

Spectral-domain optical coherence tomography (SDOCT) is a noncontact and noninvasive imaging technology offering three-dimensional (3-D), objective, and quantitative assessment of optic nerve head (ONH) in human eyes in vivo. The image quality of SDOCT scans is crucial for an accurate and reliable i...

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Autores principales: Ran, An Ran, Shi, Jian, Ngai, Amanda K., Chan, Wai-Yin, Chan, Poemen P., Young, Alvin L., Yung, Hon-Wah, Tham, Clement C., Cheung, Carol Y.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Society of Photo-Optical Instrumentation Engineers 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6823275/
https://www.ncbi.nlm.nih.gov/pubmed/31720307
http://dx.doi.org/10.1117/1.NPh.6.4.041110
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author Ran, An Ran
Shi, Jian
Ngai, Amanda K.
Chan, Wai-Yin
Chan, Poemen P.
Young, Alvin L.
Yung, Hon-Wah
Tham, Clement C.
Cheung, Carol Y.
author_facet Ran, An Ran
Shi, Jian
Ngai, Amanda K.
Chan, Wai-Yin
Chan, Poemen P.
Young, Alvin L.
Yung, Hon-Wah
Tham, Clement C.
Cheung, Carol Y.
author_sort Ran, An Ran
collection PubMed
description Spectral-domain optical coherence tomography (SDOCT) is a noncontact and noninvasive imaging technology offering three-dimensional (3-D), objective, and quantitative assessment of optic nerve head (ONH) in human eyes in vivo. The image quality of SDOCT scans is crucial for an accurate and reliable interpretation of ONH structure and for further detection of diseases. Traditionally, signal strength (SS) is used as an index to include or exclude SDOCT scans for further analysis. However, it is insufficient to assess other image quality issues such as off-centration, out of registration, missing data, motion artifacts, mirror artifacts, or blurriness, which require specialized knowledge in SDOCT for such assessment. We proposed a deep learning system (DLS) as an automated tool for filtering out ungradable SDOCT volumes. In total, 5599 SDOCT ONH volumes were collected for training (80%) and primary validation (20%). Other 711 and 298 volumes from two independent datasets, respectively, were used for external validation. An SDOCT volume was labeled as ungradable when SS was [Formula: see text] or when any artifacts influenced the measurement circle or [Formula: see text] of the peripheral area. Artifacts included (1) off-centration, (2) out of registration, (3) missing signal, (4) motion artifacts, (5) mirror artifacts, and (6) blurriness. An SDOCT volume was labeled as gradable when SS was [Formula: see text] , and there was an absence of any artifacts or artifacts only influenced [Formula: see text] peripheral area but not the retinal nerve fiber layer calculation circle. We developed and validated a 3-D DLS based on squeeze-and-excitation ResNeXt blocks and experimented with different training strategies. The area under the receiver operating characteristic curve (AUC), sensitivity, specificity, and accuracy were calculated to evaluate the performance. Heatmaps were generated by gradient-weighted class activation map. Our findings show that the presented DLS achieved a good performance in both primary and external validations, which could potentially increase the efficiency and accuracy of SDOCT volumetric scans quality control by filtering out ungradable ones automatically.
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spelling pubmed-68232752020-03-18 Artificial intelligence deep learning algorithm for discriminating ungradable optical coherence tomography three-dimensional volumetric optic disc scans Ran, An Ran Shi, Jian Ngai, Amanda K. Chan, Wai-Yin Chan, Poemen P. Young, Alvin L. Yung, Hon-Wah Tham, Clement C. Cheung, Carol Y. Neurophotonics Special Section on Advanced Retinal Imaging: Instrumentation, Methods, and Applications Spectral-domain optical coherence tomography (SDOCT) is a noncontact and noninvasive imaging technology offering three-dimensional (3-D), objective, and quantitative assessment of optic nerve head (ONH) in human eyes in vivo. The image quality of SDOCT scans is crucial for an accurate and reliable interpretation of ONH structure and for further detection of diseases. Traditionally, signal strength (SS) is used as an index to include or exclude SDOCT scans for further analysis. However, it is insufficient to assess other image quality issues such as off-centration, out of registration, missing data, motion artifacts, mirror artifacts, or blurriness, which require specialized knowledge in SDOCT for such assessment. We proposed a deep learning system (DLS) as an automated tool for filtering out ungradable SDOCT volumes. In total, 5599 SDOCT ONH volumes were collected for training (80%) and primary validation (20%). Other 711 and 298 volumes from two independent datasets, respectively, were used for external validation. An SDOCT volume was labeled as ungradable when SS was [Formula: see text] or when any artifacts influenced the measurement circle or [Formula: see text] of the peripheral area. Artifacts included (1) off-centration, (2) out of registration, (3) missing signal, (4) motion artifacts, (5) mirror artifacts, and (6) blurriness. An SDOCT volume was labeled as gradable when SS was [Formula: see text] , and there was an absence of any artifacts or artifacts only influenced [Formula: see text] peripheral area but not the retinal nerve fiber layer calculation circle. We developed and validated a 3-D DLS based on squeeze-and-excitation ResNeXt blocks and experimented with different training strategies. The area under the receiver operating characteristic curve (AUC), sensitivity, specificity, and accuracy were calculated to evaluate the performance. Heatmaps were generated by gradient-weighted class activation map. Our findings show that the presented DLS achieved a good performance in both primary and external validations, which could potentially increase the efficiency and accuracy of SDOCT volumetric scans quality control by filtering out ungradable ones automatically. Society of Photo-Optical Instrumentation Engineers 2019-11-01 2019-10 /pmc/articles/PMC6823275/ /pubmed/31720307 http://dx.doi.org/10.1117/1.NPh.6.4.041110 Text en © The Authors. Published by SPIE under a Creative Commons Attribution 4.0 Unported License. Distribution or reproduction of this work in whole or in part requires full attribution of the original publication, including its DOI.
spellingShingle Special Section on Advanced Retinal Imaging: Instrumentation, Methods, and Applications
Ran, An Ran
Shi, Jian
Ngai, Amanda K.
Chan, Wai-Yin
Chan, Poemen P.
Young, Alvin L.
Yung, Hon-Wah
Tham, Clement C.
Cheung, Carol Y.
Artificial intelligence deep learning algorithm for discriminating ungradable optical coherence tomography three-dimensional volumetric optic disc scans
title Artificial intelligence deep learning algorithm for discriminating ungradable optical coherence tomography three-dimensional volumetric optic disc scans
title_full Artificial intelligence deep learning algorithm for discriminating ungradable optical coherence tomography three-dimensional volumetric optic disc scans
title_fullStr Artificial intelligence deep learning algorithm for discriminating ungradable optical coherence tomography three-dimensional volumetric optic disc scans
title_full_unstemmed Artificial intelligence deep learning algorithm for discriminating ungradable optical coherence tomography three-dimensional volumetric optic disc scans
title_short Artificial intelligence deep learning algorithm for discriminating ungradable optical coherence tomography three-dimensional volumetric optic disc scans
title_sort artificial intelligence deep learning algorithm for discriminating ungradable optical coherence tomography three-dimensional volumetric optic disc scans
topic Special Section on Advanced Retinal Imaging: Instrumentation, Methods, and Applications
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6823275/
https://www.ncbi.nlm.nih.gov/pubmed/31720307
http://dx.doi.org/10.1117/1.NPh.6.4.041110
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