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MC-SleepNet: Large-scale Sleep Stage Scoring in Mice by Deep Neural Networks
Automated sleep stage scoring for mice is in high demand for sleep research, since manual scoring requires considerable human expertise and efforts. The existing automated scoring methods do not provide the scoring accuracy required for practical use. In addition, the performance of such methods has...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6823352/ https://www.ncbi.nlm.nih.gov/pubmed/31672998 http://dx.doi.org/10.1038/s41598-019-51269-8 |
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author | Yamabe, Masato Horie, Kazumasa Shiokawa, Hiroaki Funato, Hiromasa Yanagisawa, Masashi Kitagawa, Hiroyuki |
author_facet | Yamabe, Masato Horie, Kazumasa Shiokawa, Hiroaki Funato, Hiromasa Yanagisawa, Masashi Kitagawa, Hiroyuki |
author_sort | Yamabe, Masato |
collection | PubMed |
description | Automated sleep stage scoring for mice is in high demand for sleep research, since manual scoring requires considerable human expertise and efforts. The existing automated scoring methods do not provide the scoring accuracy required for practical use. In addition, the performance of such methods has generally been evaluated using rather small-scale datasets, and their robustness against individual differences and noise has not been adequately verified. This research proposes a novel automated scoring method named “MC-SleepNet”, which combines two types of deep neural networks. Then, we evaluate its performance using a large-scale dataset that contains 4,200 biological signal records of mice. The experimental results show that MC-SleepNet can automatically score sleep stages with an accuracy of 96.6% and kappa statistic of 0.94. In addition, we confirm that the scoring accuracy does not significantly decrease even if the target biological signals are noisy. These results suggest that MC-SleepNet is very robust against individual differences and noise. To the best of our knowledge, evaluations using such a large-scale dataset (containing 4,200 records) and high scoring accuracy (96.6%) have not been reported in previous related studies. |
format | Online Article Text |
id | pubmed-6823352 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-68233522019-11-12 MC-SleepNet: Large-scale Sleep Stage Scoring in Mice by Deep Neural Networks Yamabe, Masato Horie, Kazumasa Shiokawa, Hiroaki Funato, Hiromasa Yanagisawa, Masashi Kitagawa, Hiroyuki Sci Rep Article Automated sleep stage scoring for mice is in high demand for sleep research, since manual scoring requires considerable human expertise and efforts. The existing automated scoring methods do not provide the scoring accuracy required for practical use. In addition, the performance of such methods has generally been evaluated using rather small-scale datasets, and their robustness against individual differences and noise has not been adequately verified. This research proposes a novel automated scoring method named “MC-SleepNet”, which combines two types of deep neural networks. Then, we evaluate its performance using a large-scale dataset that contains 4,200 biological signal records of mice. The experimental results show that MC-SleepNet can automatically score sleep stages with an accuracy of 96.6% and kappa statistic of 0.94. In addition, we confirm that the scoring accuracy does not significantly decrease even if the target biological signals are noisy. These results suggest that MC-SleepNet is very robust against individual differences and noise. To the best of our knowledge, evaluations using such a large-scale dataset (containing 4,200 records) and high scoring accuracy (96.6%) have not been reported in previous related studies. Nature Publishing Group UK 2019-10-31 /pmc/articles/PMC6823352/ /pubmed/31672998 http://dx.doi.org/10.1038/s41598-019-51269-8 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Yamabe, Masato Horie, Kazumasa Shiokawa, Hiroaki Funato, Hiromasa Yanagisawa, Masashi Kitagawa, Hiroyuki MC-SleepNet: Large-scale Sleep Stage Scoring in Mice by Deep Neural Networks |
title | MC-SleepNet: Large-scale Sleep Stage Scoring in Mice by Deep Neural Networks |
title_full | MC-SleepNet: Large-scale Sleep Stage Scoring in Mice by Deep Neural Networks |
title_fullStr | MC-SleepNet: Large-scale Sleep Stage Scoring in Mice by Deep Neural Networks |
title_full_unstemmed | MC-SleepNet: Large-scale Sleep Stage Scoring in Mice by Deep Neural Networks |
title_short | MC-SleepNet: Large-scale Sleep Stage Scoring in Mice by Deep Neural Networks |
title_sort | mc-sleepnet: large-scale sleep stage scoring in mice by deep neural networks |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6823352/ https://www.ncbi.nlm.nih.gov/pubmed/31672998 http://dx.doi.org/10.1038/s41598-019-51269-8 |
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