Cargando…

MC-SleepNet: Large-scale Sleep Stage Scoring in Mice by Deep Neural Networks

Automated sleep stage scoring for mice is in high demand for sleep research, since manual scoring requires considerable human expertise and efforts. The existing automated scoring methods do not provide the scoring accuracy required for practical use. In addition, the performance of such methods has...

Descripción completa

Detalles Bibliográficos
Autores principales: Yamabe, Masato, Horie, Kazumasa, Shiokawa, Hiroaki, Funato, Hiromasa, Yanagisawa, Masashi, Kitagawa, Hiroyuki
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6823352/
https://www.ncbi.nlm.nih.gov/pubmed/31672998
http://dx.doi.org/10.1038/s41598-019-51269-8
_version_ 1783464509808050176
author Yamabe, Masato
Horie, Kazumasa
Shiokawa, Hiroaki
Funato, Hiromasa
Yanagisawa, Masashi
Kitagawa, Hiroyuki
author_facet Yamabe, Masato
Horie, Kazumasa
Shiokawa, Hiroaki
Funato, Hiromasa
Yanagisawa, Masashi
Kitagawa, Hiroyuki
author_sort Yamabe, Masato
collection PubMed
description Automated sleep stage scoring for mice is in high demand for sleep research, since manual scoring requires considerable human expertise and efforts. The existing automated scoring methods do not provide the scoring accuracy required for practical use. In addition, the performance of such methods has generally been evaluated using rather small-scale datasets, and their robustness against individual differences and noise has not been adequately verified. This research proposes a novel automated scoring method named “MC-SleepNet”, which combines two types of deep neural networks. Then, we evaluate its performance using a large-scale dataset that contains 4,200 biological signal records of mice. The experimental results show that MC-SleepNet can automatically score sleep stages with an accuracy of 96.6% and kappa statistic of 0.94. In addition, we confirm that the scoring accuracy does not significantly decrease even if the target biological signals are noisy. These results suggest that MC-SleepNet is very robust against individual differences and noise. To the best of our knowledge, evaluations using such a large-scale dataset (containing 4,200 records) and high scoring accuracy (96.6%) have not been reported in previous related studies.
format Online
Article
Text
id pubmed-6823352
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-68233522019-11-12 MC-SleepNet: Large-scale Sleep Stage Scoring in Mice by Deep Neural Networks Yamabe, Masato Horie, Kazumasa Shiokawa, Hiroaki Funato, Hiromasa Yanagisawa, Masashi Kitagawa, Hiroyuki Sci Rep Article Automated sleep stage scoring for mice is in high demand for sleep research, since manual scoring requires considerable human expertise and efforts. The existing automated scoring methods do not provide the scoring accuracy required for practical use. In addition, the performance of such methods has generally been evaluated using rather small-scale datasets, and their robustness against individual differences and noise has not been adequately verified. This research proposes a novel automated scoring method named “MC-SleepNet”, which combines two types of deep neural networks. Then, we evaluate its performance using a large-scale dataset that contains 4,200 biological signal records of mice. The experimental results show that MC-SleepNet can automatically score sleep stages with an accuracy of 96.6% and kappa statistic of 0.94. In addition, we confirm that the scoring accuracy does not significantly decrease even if the target biological signals are noisy. These results suggest that MC-SleepNet is very robust against individual differences and noise. To the best of our knowledge, evaluations using such a large-scale dataset (containing 4,200 records) and high scoring accuracy (96.6%) have not been reported in previous related studies. Nature Publishing Group UK 2019-10-31 /pmc/articles/PMC6823352/ /pubmed/31672998 http://dx.doi.org/10.1038/s41598-019-51269-8 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Yamabe, Masato
Horie, Kazumasa
Shiokawa, Hiroaki
Funato, Hiromasa
Yanagisawa, Masashi
Kitagawa, Hiroyuki
MC-SleepNet: Large-scale Sleep Stage Scoring in Mice by Deep Neural Networks
title MC-SleepNet: Large-scale Sleep Stage Scoring in Mice by Deep Neural Networks
title_full MC-SleepNet: Large-scale Sleep Stage Scoring in Mice by Deep Neural Networks
title_fullStr MC-SleepNet: Large-scale Sleep Stage Scoring in Mice by Deep Neural Networks
title_full_unstemmed MC-SleepNet: Large-scale Sleep Stage Scoring in Mice by Deep Neural Networks
title_short MC-SleepNet: Large-scale Sleep Stage Scoring in Mice by Deep Neural Networks
title_sort mc-sleepnet: large-scale sleep stage scoring in mice by deep neural networks
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6823352/
https://www.ncbi.nlm.nih.gov/pubmed/31672998
http://dx.doi.org/10.1038/s41598-019-51269-8
work_keys_str_mv AT yamabemasato mcsleepnetlargescalesleepstagescoringinmicebydeepneuralnetworks
AT horiekazumasa mcsleepnetlargescalesleepstagescoringinmicebydeepneuralnetworks
AT shiokawahiroaki mcsleepnetlargescalesleepstagescoringinmicebydeepneuralnetworks
AT funatohiromasa mcsleepnetlargescalesleepstagescoringinmicebydeepneuralnetworks
AT yanagisawamasashi mcsleepnetlargescalesleepstagescoringinmicebydeepneuralnetworks
AT kitagawahiroyuki mcsleepnetlargescalesleepstagescoringinmicebydeepneuralnetworks