Cargando…
The Personal Genome Project-UK, an open access resource of human multi-omics data
Integrative analysis of multi-omics data is a powerful approach for gaining functional insights into biological and medical processes. Conducting these multifaceted analyses on human samples is often complicated by the fact that the raw sequencing output is rarely available under open access. The Pe...
Autores principales: | , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6823446/ https://www.ncbi.nlm.nih.gov/pubmed/31672996 http://dx.doi.org/10.1038/s41597-019-0205-4 |
_version_ | 1783464530071781376 |
---|---|
author | Chervova, Olga Conde, Lucia Guerra-Assunção, José Afonso Moghul, Ismail Webster, Amy P. Berner, Alison Larose Cadieux, Elizabeth Tian, Yuan Voloshin, Vitaly Jesus, Tiago F. Hamoudi, Rifat Herrero, Javier Beck, Stephan |
author_facet | Chervova, Olga Conde, Lucia Guerra-Assunção, José Afonso Moghul, Ismail Webster, Amy P. Berner, Alison Larose Cadieux, Elizabeth Tian, Yuan Voloshin, Vitaly Jesus, Tiago F. Hamoudi, Rifat Herrero, Javier Beck, Stephan |
author_sort | Chervova, Olga |
collection | PubMed |
description | Integrative analysis of multi-omics data is a powerful approach for gaining functional insights into biological and medical processes. Conducting these multifaceted analyses on human samples is often complicated by the fact that the raw sequencing output is rarely available under open access. The Personal Genome Project UK (PGP-UK) is one of few resources that recruits its participants under open consent and makes the resulting multi-omics data freely and openly available. As part of this resource, we describe the PGP-UK multi-omics reference panel consisting of ten genomic, methylomic and transcriptomic data. Specifically, we outline the data processing, quality control and validation procedures which were implemented to ensure data integrity and exclude sample mix-ups. In addition, we provide a REST API to facilitate the download of the entire PGP-UK dataset. The data are also available from two cloud-based environments, providing platforms for free integrated analysis. In conclusion, the genotype-validated PGP-UK multi-omics human reference panel described here provides a valuable new open access resource for integrated analyses in support of personal and medical genomics. |
format | Online Article Text |
id | pubmed-6823446 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-68234462019-11-07 The Personal Genome Project-UK, an open access resource of human multi-omics data Chervova, Olga Conde, Lucia Guerra-Assunção, José Afonso Moghul, Ismail Webster, Amy P. Berner, Alison Larose Cadieux, Elizabeth Tian, Yuan Voloshin, Vitaly Jesus, Tiago F. Hamoudi, Rifat Herrero, Javier Beck, Stephan Sci Data Data Descriptor Integrative analysis of multi-omics data is a powerful approach for gaining functional insights into biological and medical processes. Conducting these multifaceted analyses on human samples is often complicated by the fact that the raw sequencing output is rarely available under open access. The Personal Genome Project UK (PGP-UK) is one of few resources that recruits its participants under open consent and makes the resulting multi-omics data freely and openly available. As part of this resource, we describe the PGP-UK multi-omics reference panel consisting of ten genomic, methylomic and transcriptomic data. Specifically, we outline the data processing, quality control and validation procedures which were implemented to ensure data integrity and exclude sample mix-ups. In addition, we provide a REST API to facilitate the download of the entire PGP-UK dataset. The data are also available from two cloud-based environments, providing platforms for free integrated analysis. In conclusion, the genotype-validated PGP-UK multi-omics human reference panel described here provides a valuable new open access resource for integrated analyses in support of personal and medical genomics. Nature Publishing Group UK 2019-10-31 /pmc/articles/PMC6823446/ /pubmed/31672996 http://dx.doi.org/10.1038/s41597-019-0205-4 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files associated with this article. |
spellingShingle | Data Descriptor Chervova, Olga Conde, Lucia Guerra-Assunção, José Afonso Moghul, Ismail Webster, Amy P. Berner, Alison Larose Cadieux, Elizabeth Tian, Yuan Voloshin, Vitaly Jesus, Tiago F. Hamoudi, Rifat Herrero, Javier Beck, Stephan The Personal Genome Project-UK, an open access resource of human multi-omics data |
title | The Personal Genome Project-UK, an open access resource of human multi-omics data |
title_full | The Personal Genome Project-UK, an open access resource of human multi-omics data |
title_fullStr | The Personal Genome Project-UK, an open access resource of human multi-omics data |
title_full_unstemmed | The Personal Genome Project-UK, an open access resource of human multi-omics data |
title_short | The Personal Genome Project-UK, an open access resource of human multi-omics data |
title_sort | personal genome project-uk, an open access resource of human multi-omics data |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6823446/ https://www.ncbi.nlm.nih.gov/pubmed/31672996 http://dx.doi.org/10.1038/s41597-019-0205-4 |
work_keys_str_mv | AT chervovaolga thepersonalgenomeprojectukanopenaccessresourceofhumanmultiomicsdata AT condelucia thepersonalgenomeprojectukanopenaccessresourceofhumanmultiomicsdata AT guerraassuncaojoseafonso thepersonalgenomeprojectukanopenaccessresourceofhumanmultiomicsdata AT moghulismail thepersonalgenomeprojectukanopenaccessresourceofhumanmultiomicsdata AT websteramyp thepersonalgenomeprojectukanopenaccessresourceofhumanmultiomicsdata AT berneralison thepersonalgenomeprojectukanopenaccessresourceofhumanmultiomicsdata AT larosecadieuxelizabeth thepersonalgenomeprojectukanopenaccessresourceofhumanmultiomicsdata AT tianyuan thepersonalgenomeprojectukanopenaccessresourceofhumanmultiomicsdata AT voloshinvitaly thepersonalgenomeprojectukanopenaccessresourceofhumanmultiomicsdata AT jesustiagof thepersonalgenomeprojectukanopenaccessresourceofhumanmultiomicsdata AT hamoudirifat thepersonalgenomeprojectukanopenaccessresourceofhumanmultiomicsdata AT herrerojavier thepersonalgenomeprojectukanopenaccessresourceofhumanmultiomicsdata AT beckstephan thepersonalgenomeprojectukanopenaccessresourceofhumanmultiomicsdata AT chervovaolga personalgenomeprojectukanopenaccessresourceofhumanmultiomicsdata AT condelucia personalgenomeprojectukanopenaccessresourceofhumanmultiomicsdata AT guerraassuncaojoseafonso personalgenomeprojectukanopenaccessresourceofhumanmultiomicsdata AT moghulismail personalgenomeprojectukanopenaccessresourceofhumanmultiomicsdata AT websteramyp personalgenomeprojectukanopenaccessresourceofhumanmultiomicsdata AT berneralison personalgenomeprojectukanopenaccessresourceofhumanmultiomicsdata AT larosecadieuxelizabeth personalgenomeprojectukanopenaccessresourceofhumanmultiomicsdata AT tianyuan personalgenomeprojectukanopenaccessresourceofhumanmultiomicsdata AT voloshinvitaly personalgenomeprojectukanopenaccessresourceofhumanmultiomicsdata AT jesustiagof personalgenomeprojectukanopenaccessresourceofhumanmultiomicsdata AT hamoudirifat personalgenomeprojectukanopenaccessresourceofhumanmultiomicsdata AT herrerojavier personalgenomeprojectukanopenaccessresourceofhumanmultiomicsdata AT beckstephan personalgenomeprojectukanopenaccessresourceofhumanmultiomicsdata |