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Machine-learning based reconstructions of primary and secondary climate variables from North American and European fossil pollen data

We test several quantitative algorithms as palaeoclimate reconstruction tools for North American and European fossil pollen data, using both classical methods and newer machine-learning approaches based on regression tree ensembles and artificial neural networks. We focus on the reconstruction of se...

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Autores principales: Salonen, J. Sakari, Korpela, Mikko, Williams, John W., Luoto, Miska
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6825136/
https://www.ncbi.nlm.nih.gov/pubmed/31676769
http://dx.doi.org/10.1038/s41598-019-52293-4
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author Salonen, J. Sakari
Korpela, Mikko
Williams, John W.
Luoto, Miska
author_facet Salonen, J. Sakari
Korpela, Mikko
Williams, John W.
Luoto, Miska
author_sort Salonen, J. Sakari
collection PubMed
description We test several quantitative algorithms as palaeoclimate reconstruction tools for North American and European fossil pollen data, using both classical methods and newer machine-learning approaches based on regression tree ensembles and artificial neural networks. We focus on the reconstruction of secondary climate variables (here, January temperature and annual water balance), as their comparatively small ecological influence compared to the primary variable (July temperature) presents special challenges to palaeo-reconstructions. We test the pollen–climate models using a novel and comprehensive cross-validation approach, running a series of h-block cross-validations using h values of 100–1500 km. Our study illustrates major benefits of this variable h-block cross-validation scheme, as the effect of spatial autocorrelation is minimized, while the cross-validations with increasing h values can reveal instabilities in the calibration model and approximate challenges faced in palaeo-reconstructions with poor modern analogues. We achieve well-performing calibration models for both primary and secondary climate variables, with boosted regression trees providing the overall most robust performance, while the palaeoclimate reconstructions from fossil datasets show major independent features for the primary and secondary variables. Our results suggest that with careful variable selection and consideration of ecological processes, robust reconstruction of both primary and secondary climate variables is possible.
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spelling pubmed-68251362019-11-12 Machine-learning based reconstructions of primary and secondary climate variables from North American and European fossil pollen data Salonen, J. Sakari Korpela, Mikko Williams, John W. Luoto, Miska Sci Rep Article We test several quantitative algorithms as palaeoclimate reconstruction tools for North American and European fossil pollen data, using both classical methods and newer machine-learning approaches based on regression tree ensembles and artificial neural networks. We focus on the reconstruction of secondary climate variables (here, January temperature and annual water balance), as their comparatively small ecological influence compared to the primary variable (July temperature) presents special challenges to palaeo-reconstructions. We test the pollen–climate models using a novel and comprehensive cross-validation approach, running a series of h-block cross-validations using h values of 100–1500 km. Our study illustrates major benefits of this variable h-block cross-validation scheme, as the effect of spatial autocorrelation is minimized, while the cross-validations with increasing h values can reveal instabilities in the calibration model and approximate challenges faced in palaeo-reconstructions with poor modern analogues. We achieve well-performing calibration models for both primary and secondary climate variables, with boosted regression trees providing the overall most robust performance, while the palaeoclimate reconstructions from fossil datasets show major independent features for the primary and secondary variables. Our results suggest that with careful variable selection and consideration of ecological processes, robust reconstruction of both primary and secondary climate variables is possible. Nature Publishing Group UK 2019-11-01 /pmc/articles/PMC6825136/ /pubmed/31676769 http://dx.doi.org/10.1038/s41598-019-52293-4 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Salonen, J. Sakari
Korpela, Mikko
Williams, John W.
Luoto, Miska
Machine-learning based reconstructions of primary and secondary climate variables from North American and European fossil pollen data
title Machine-learning based reconstructions of primary and secondary climate variables from North American and European fossil pollen data
title_full Machine-learning based reconstructions of primary and secondary climate variables from North American and European fossil pollen data
title_fullStr Machine-learning based reconstructions of primary and secondary climate variables from North American and European fossil pollen data
title_full_unstemmed Machine-learning based reconstructions of primary and secondary climate variables from North American and European fossil pollen data
title_short Machine-learning based reconstructions of primary and secondary climate variables from North American and European fossil pollen data
title_sort machine-learning based reconstructions of primary and secondary climate variables from north american and european fossil pollen data
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6825136/
https://www.ncbi.nlm.nih.gov/pubmed/31676769
http://dx.doi.org/10.1038/s41598-019-52293-4
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