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A Data-Driven Approach to Predicting Septic Shock in the Intensive Care Unit

Early diagnosis of sepsis and septic shock has been unambiguously linked to lower mortality and better patient outcomes. Despite this, there is a strong unmet need for a reliable clinical tool that can be used for large-scale automated screening to identify high-risk patients. We addressed the follo...

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Autores principales: Yee, Christopher R, Narain, Niven R, Akmaev, Viatcheslav R, Vemulapalli, Vijetha
Formato: Online Artículo Texto
Lenguaje:English
Publicado: SAGE Publications 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6829643/
https://www.ncbi.nlm.nih.gov/pubmed/31700248
http://dx.doi.org/10.1177/1178222619885147
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author Yee, Christopher R
Narain, Niven R
Akmaev, Viatcheslav R
Vemulapalli, Vijetha
author_facet Yee, Christopher R
Narain, Niven R
Akmaev, Viatcheslav R
Vemulapalli, Vijetha
author_sort Yee, Christopher R
collection PubMed
description Early diagnosis of sepsis and septic shock has been unambiguously linked to lower mortality and better patient outcomes. Despite this, there is a strong unmet need for a reliable clinical tool that can be used for large-scale automated screening to identify high-risk patients. We addressed the following questions: Can a novel algorithm to identify patients at high risk of septic shock 24 hours before diagnosis be discovered using available clinical data? What are performance characteristics of this predictive algorithm? Can current metrics for evaluation of sepsis be improved using novel algorithm? Publicly available data from the intensive care unit setting was used to build septic shock and control patient cohorts. Using Bayesian networks, causal relationships between diagnosis groups, procedure groups, laboratory results, and demographic data were inferred. Predictive model for septic shock 24 hours prior to digital diagnosis was built based on inferred causal networks. Sepsis risk scores were augmented by de novo inferred model and performance was evaluated. A novel predictive model to identify high-risk patients 24 hours ahead of time, with area under curve of 0.81, negative predictive value of 0.87, and a positive predictive value as high as 0.65 was built. The specificity of quick sequential organ failure assessment, systemic inflammatory response syndrome, and modified early warning score was improved when augmented with the novel model, whereas no improvements were made to the sequential organ failure assessment score. We used a data-driven, expert knowledge agnostic method to build a screening algorithm for early detection of septic shock. The model demonstrates strong performance in the data set used and provides a basis for expanding this work toward building an algorithm that is used to screen patients based on electronic medical record data in real time.
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spelling pubmed-68296432019-11-07 A Data-Driven Approach to Predicting Septic Shock in the Intensive Care Unit Yee, Christopher R Narain, Niven R Akmaev, Viatcheslav R Vemulapalli, Vijetha Biomed Inform Insights Original Research Early diagnosis of sepsis and septic shock has been unambiguously linked to lower mortality and better patient outcomes. Despite this, there is a strong unmet need for a reliable clinical tool that can be used for large-scale automated screening to identify high-risk patients. We addressed the following questions: Can a novel algorithm to identify patients at high risk of septic shock 24 hours before diagnosis be discovered using available clinical data? What are performance characteristics of this predictive algorithm? Can current metrics for evaluation of sepsis be improved using novel algorithm? Publicly available data from the intensive care unit setting was used to build septic shock and control patient cohorts. Using Bayesian networks, causal relationships between diagnosis groups, procedure groups, laboratory results, and demographic data were inferred. Predictive model for septic shock 24 hours prior to digital diagnosis was built based on inferred causal networks. Sepsis risk scores were augmented by de novo inferred model and performance was evaluated. A novel predictive model to identify high-risk patients 24 hours ahead of time, with area under curve of 0.81, negative predictive value of 0.87, and a positive predictive value as high as 0.65 was built. The specificity of quick sequential organ failure assessment, systemic inflammatory response syndrome, and modified early warning score was improved when augmented with the novel model, whereas no improvements were made to the sequential organ failure assessment score. We used a data-driven, expert knowledge agnostic method to build a screening algorithm for early detection of septic shock. The model demonstrates strong performance in the data set used and provides a basis for expanding this work toward building an algorithm that is used to screen patients based on electronic medical record data in real time. SAGE Publications 2019-11-04 /pmc/articles/PMC6829643/ /pubmed/31700248 http://dx.doi.org/10.1177/1178222619885147 Text en © The Author(s) 2019 http://www.creativecommons.org/licenses/by-nc/4.0/ This article is distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 License (http://www.creativecommons.org/licenses/by-nc/4.0/) which permits non-commercial use, reproduction and distribution of the work without further permission provided the original work is attributed as specified on the SAGE and Open Access pages (https://us.sagepub.com/en-us/nam/open-access-at-sage).
spellingShingle Original Research
Yee, Christopher R
Narain, Niven R
Akmaev, Viatcheslav R
Vemulapalli, Vijetha
A Data-Driven Approach to Predicting Septic Shock in the Intensive Care Unit
title A Data-Driven Approach to Predicting Septic Shock in the Intensive Care Unit
title_full A Data-Driven Approach to Predicting Septic Shock in the Intensive Care Unit
title_fullStr A Data-Driven Approach to Predicting Septic Shock in the Intensive Care Unit
title_full_unstemmed A Data-Driven Approach to Predicting Septic Shock in the Intensive Care Unit
title_short A Data-Driven Approach to Predicting Septic Shock in the Intensive Care Unit
title_sort data-driven approach to predicting septic shock in the intensive care unit
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6829643/
https://www.ncbi.nlm.nih.gov/pubmed/31700248
http://dx.doi.org/10.1177/1178222619885147
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