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Different packing motifs mediated by weak interactions and polymorphism in the crystal structures of five 2-(benzylidene)benzosuberone derivatives
The syntheses and crystal structures of five 2-benzylidene-1-benzosuberone [1-benzosuberone is 6,7,8,9-tetrahydro-5H-benzo[7]annulen-5-one] derivatives, viz. 2-(4-methoxybenzylidene)-1-benzosuberone, C(19)H(18)O(2), (I), 2-(4-ethoxybenzylidene)-1-benzosuberone, C(20)H(20)O(2), (II), 2-(4-ben...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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International Union of Crystallography
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6829743/ https://www.ncbi.nlm.nih.gov/pubmed/31709101 http://dx.doi.org/10.1107/S2056989019014245 |
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author | Seaman, Lewis S. da Costa, Cristiane F. de Souza, Marcus V. N. Wardell, Solange M. S. V. Wardell, James L. Harrison, William T. A. |
author_facet | Seaman, Lewis S. da Costa, Cristiane F. de Souza, Marcus V. N. Wardell, Solange M. S. V. Wardell, James L. Harrison, William T. A. |
author_sort | Seaman, Lewis S. |
collection | PubMed |
description | The syntheses and crystal structures of five 2-benzylidene-1-benzosuberone [1-benzosuberone is 6,7,8,9-tetrahydro-5H-benzo[7]annulen-5-one] derivatives, viz. 2-(4-methoxybenzylidene)-1-benzosuberone, C(19)H(18)O(2), (I), 2-(4-ethoxybenzylidene)-1-benzosuberone, C(20)H(20)O(2), (II), 2-(4-benzylbenzylidene)-1-benzosuberone, C(25)H(22)O(2), (III), 2-(4-chlorobenzylidene)-1-benzosuberone, C(18)H(15)ClO, (IV) and 2-(4-cyanobenzylidene)-1-benzosuberone, C(19)H(15)NO, (V), are described. The conformations of the benzosuberone fused six- plus seven-membered ring fragments are very similar in each case, but the dihedral angles between the fused benzene ring and the pendant benzene ring differ somewhat, with values of 23.79 (3) for (I), 24.60 (4) for (II), 33.72 (4) for (III), 29.93 (8) for (IV) and 21.81 (7)° for (V). Key features of the packing include pairwise C—H⋯O hydrogen bonds for (II) and (IV), and pairwise C—H⋯N hydrogen bonds for (V), which generate inversion dimers in each case. The packing for (I) and (III) feature C—H⋯O hydrogen bonds, which lead to [010] and [100] chains, respectively. Weak C—H⋯π interactions consolidate the structures and weak aromatic π–π stacking is seen in (II) [centroid–centroid separation = 3.8414 (7) Å] and (III) [3.9475 (7) Å]. A polymorph of (I) crystallized from a different solvent has been reported previously [Dimmock et al. (1999 ▸) J. Med. Chem. 42, 1358–1366] in the same space group but with a packing motif based on inversion dimers resembling that seen in (IV) in the present study. The Hirshfeld surfaces and fingerprint plots for (I) and its polymorph are compared and structural features of the 2-benzylidene-1-benzosuberone family of phases are surveyed. |
format | Online Article Text |
id | pubmed-6829743 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-68297432019-11-08 Different packing motifs mediated by weak interactions and polymorphism in the crystal structures of five 2-(benzylidene)benzosuberone derivatives Seaman, Lewis S. da Costa, Cristiane F. de Souza, Marcus V. N. Wardell, Solange M. S. V. Wardell, James L. Harrison, William T. A. Acta Crystallogr E Crystallogr Commun Research Communications The syntheses and crystal structures of five 2-benzylidene-1-benzosuberone [1-benzosuberone is 6,7,8,9-tetrahydro-5H-benzo[7]annulen-5-one] derivatives, viz. 2-(4-methoxybenzylidene)-1-benzosuberone, C(19)H(18)O(2), (I), 2-(4-ethoxybenzylidene)-1-benzosuberone, C(20)H(20)O(2), (II), 2-(4-benzylbenzylidene)-1-benzosuberone, C(25)H(22)O(2), (III), 2-(4-chlorobenzylidene)-1-benzosuberone, C(18)H(15)ClO, (IV) and 2-(4-cyanobenzylidene)-1-benzosuberone, C(19)H(15)NO, (V), are described. The conformations of the benzosuberone fused six- plus seven-membered ring fragments are very similar in each case, but the dihedral angles between the fused benzene ring and the pendant benzene ring differ somewhat, with values of 23.79 (3) for (I), 24.60 (4) for (II), 33.72 (4) for (III), 29.93 (8) for (IV) and 21.81 (7)° for (V). Key features of the packing include pairwise C—H⋯O hydrogen bonds for (II) and (IV), and pairwise C—H⋯N hydrogen bonds for (V), which generate inversion dimers in each case. The packing for (I) and (III) feature C—H⋯O hydrogen bonds, which lead to [010] and [100] chains, respectively. Weak C—H⋯π interactions consolidate the structures and weak aromatic π–π stacking is seen in (II) [centroid–centroid separation = 3.8414 (7) Å] and (III) [3.9475 (7) Å]. A polymorph of (I) crystallized from a different solvent has been reported previously [Dimmock et al. (1999 ▸) J. Med. Chem. 42, 1358–1366] in the same space group but with a packing motif based on inversion dimers resembling that seen in (IV) in the present study. The Hirshfeld surfaces and fingerprint plots for (I) and its polymorph are compared and structural features of the 2-benzylidene-1-benzosuberone family of phases are surveyed. International Union of Crystallography 2019-10-29 /pmc/articles/PMC6829743/ /pubmed/31709101 http://dx.doi.org/10.1107/S2056989019014245 Text en © Seaman et al. 2019 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Research Communications Seaman, Lewis S. da Costa, Cristiane F. de Souza, Marcus V. N. Wardell, Solange M. S. V. Wardell, James L. Harrison, William T. A. Different packing motifs mediated by weak interactions and polymorphism in the crystal structures of five 2-(benzylidene)benzosuberone derivatives |
title | Different packing motifs mediated by weak interactions and polymorphism in the crystal structures of five 2-(benzylidene)benzosuberone derivatives |
title_full | Different packing motifs mediated by weak interactions and polymorphism in the crystal structures of five 2-(benzylidene)benzosuberone derivatives |
title_fullStr | Different packing motifs mediated by weak interactions and polymorphism in the crystal structures of five 2-(benzylidene)benzosuberone derivatives |
title_full_unstemmed | Different packing motifs mediated by weak interactions and polymorphism in the crystal structures of five 2-(benzylidene)benzosuberone derivatives |
title_short | Different packing motifs mediated by weak interactions and polymorphism in the crystal structures of five 2-(benzylidene)benzosuberone derivatives |
title_sort | different packing motifs mediated by weak interactions and polymorphism in the crystal structures of five 2-(benzylidene)benzosuberone derivatives |
topic | Research Communications |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6829743/ https://www.ncbi.nlm.nih.gov/pubmed/31709101 http://dx.doi.org/10.1107/S2056989019014245 |
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