Cargando…

An Efficient and Flexible Method for Deconvoluting Bulk RNA-Seq Data with Single-Cell RNA-Seq Data

Estimating cell type compositions for complex diseases is an important step to investigate the cellular heterogeneity for understanding disease etiology and potentially facilitate early disease diagnosis and prevention. Here, we developed a computationally statistical method, referring to Multi-Omic...

Descripción completa

Detalles Bibliográficos
Autores principales:	Sun, Xifang, Sun, Shiquan, Yang, Sheng
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2019
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6830085/ https://www.ncbi.nlm.nih.gov/pubmed/31569701 http://dx.doi.org/10.3390/cells8101161

Ejemplares similares

Effective methods for bulk RNA-seq deconvolution using scnRNA-seq transcriptomes
por: Cobos, Francisco Avila, et al.
Publicado: (2023)

Semi-deconvolution of bulk and single-cell RNA-seq data with application to metastatic progression in breast cancer
por: Lei, Haoyun, et al.
Publicado: (2022)

EPISCORE: cell type deconvolution of bulk tissue DNA methylomes from single-cell RNA-Seq data
por: Teschendorff, Andrew E., et al.
Publicado: (2020)

SCRABBLE: single-cell RNA-seq imputation constrained by bulk RNA-seq data
por: Peng, Tao, et al.
Publicado: (2019)

Deciphering Tumour Microenvironment of Liver Cancer through Deconvolution of Bulk RNA-Seq Data with Single-Cell Atlas
por: Zhang, Shaoshi, et al.
Publicado: (2022)

Cell-type deconvolution of bulk RNA-Seq from kidney using opensource bioinformatic tools
por: Riojas, Angelica M., et al.
Publicado: (2023)

Cell type deconvolution of bulk blood RNA-Seq to reveal biological insights of neuropsychiatric disorders
por: Boltz, Toni, et al.
Publicado: (2023)

Modeling group heteroscedasticity in single-cell RNA-seq pseudo-bulk data
por: You, Yue, et al.
Publicado: (2023)

BingleSeq: a user-friendly R package for bulk and single-cell RNA-Seq data analysis
por: Dimitrov, Daniel, et al.
Publicado: (2020)

Temporal Dynamic Methods for Bulk RNA-Seq Time Series Data
por: Oh, Vera-Khlara S., et al.
Publicado: (2021)

Evaluating imputation methods for single-cell RNA-seq data
por: Cheng, Yi, et al.
Publicado: (2023)

Integrating Single-Cell RNA-Seq and Bulk RNA-Seq Data to Explore the Key Role of Fatty Acid Metabolism in Breast Cancer
por: Chen, Yongxing, et al.
Publicado: (2023)

Digitaldlsorter: Deep-Learning on scRNA-Seq to Deconvolute Gene Expression Data
por: Torroja, Carlos, et al.
Publicado: (2019)

Assessment of statistical methods from single cell, bulk RNA-seq, and metagenomics applied to microbiome data
por: Calgaro, Matteo, et al.
Publicado: (2020)

High-Order Correlation Integration for Single-Cell or Bulk RNA-seq Data Analysis
por: Tang, Hui, et al.
Publicado: (2019)

SPsimSeq: semi-parametric simulation of bulk and single-cell RNA-sequencing data
por: Assefa, Alemu Takele, et al.
Publicado: (2020)

Differential transcript usage analysis of bulk and single-cell RNA-seq data with DTUrtle
por: Tekath, Tobias, et al.
Publicado: (2021)

Venus: An efficient virus infection detection and fusion site discovery method using single-cell and bulk RNA-seq data
por: Lee, Che Yu, et al.
Publicado: (2022)

Single‐cell RNA‐seq and bulk RNA‐seq explore the prognostic value of exhausted T cells in hepatocellular carcinoma
por: Tang, Xiaolong, et al.
Publicado: (2023)

Prime-seq, efficient and powerful bulk RNA sequencing
por: Janjic, Aleksandar, et al.
Publicado: (2022)

HArmonized single-cell RNA-seq Cell type Assisted Deconvolution (HASCAD)
por: Chiu, Yen-Jung, et al.
Publicado: (2023)

De novo analysis of bulk RNA-seq data at spatially resolved single-cell resolution
por: Liao, Jie, et al.
Publicado: (2022)

TRUST4: immune repertoire reconstruction from bulk and single-cell RNA-seq data
por: Song, Li, et al.
Publicado: (2021)

Accuracy, robustness and scalability of dimensionality reduction methods for single-cell RNA-seq analysis
por: Sun, Shiquan, et al.
Publicado: (2019)

A general and flexible method for signal extraction from single-cell RNA-seq data
por: Risso, Davide, et al.
Publicado: (2018)

A Survey on Methods for Predicting Polyadenylation Sites from DNA Sequences, Bulk RNA-seq, and Single-cell RNA-seq
por: Ye, Wenbin, et al.
Publicado: (2023)

Molecular and pharmacological modulators of the tumor immune contexture revealed by deconvolution of RNA-seq data
por: Finotello, Francesca, et al.
Publicado: (2019)

Corrigendum: Digitaldlsorter: Deep-Learning on scRNA-Seq to Deconvolute Gene Expression Data
por: Torroja, Carlos, et al.
Publicado: (2020)

Publisher Correction: Modeling group heteroscedasticity in single-cell RNA-seq pseudo-bulk data
por: You, Yue, et al.
Publicado: (2023)

Characterizing cancer metabolism from bulk and single-cell RNA-seq data using METAFlux
por: Huang, Yuefan, et al.
Publicado: (2023)

Construction of cancer- associated fibroblasts related risk signature based on single-cell RNA-seq and bulk RNA-seq data in bladder urothelial carcinoma
por: Liu, Yunxun, et al.
Publicado: (2023)

Clustering-independent estimation of cell abundances in bulk tissues using single-cell RNA-seq data
por: Aubin, Rachael G., et al.
Publicado: (2023)

Analysis of damage-associated molecular patterns in amyotrophic lateral sclerosis based on ScRNA-seq and bulk RNA-seq data
por: Shi, Yue, et al.
Publicado: (2023)

Integrative Analysis of Bulk RNA-Seq and Single-Cell RNA-Seq Unveils Novel Prognostic Biomarkers in Multiple Myeloma
por: Zhao, Jing, et al.
Publicado: (2022)

Integrated analysis of single-cell RNA-seq and bulk RNA-seq unravels the heterogeneity of cancer-associated fibroblasts in TNBC
por: Wu, Xiaoqing, et al.
Publicado: (2023)

Correction to: Molecular and pharmacological modulators of the tumor immune contexture revealed by deconvolution of RNA-seq data
por: Finotello, Francesca, et al.
Publicado: (2019)

A flexible Bayesian method for detecting allelic imbalance in RNA-seq data
por: León-Novelo, Luis G, et al.
Publicado: (2014)

Deep transfer learning of cancer drug responses by integrating bulk and single-cell RNA-seq data
por: Chen, Junyi, et al.
Publicado: (2022)

Gene Mapping via Bulked Segregant RNA-Seq (BSR-Seq)
por: Liu, Sanzhen, et al.
Publicado: (2012)

RNA-SSNV: A Reliable Somatic Single Nucleotide Variant Identification Framework for Bulk RNA-Seq Data
por: Long, Qihan, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_bbbst2k6eghqpsckodb2qnm44k