The complete chloroplast genome of Dendrobium nobile, an endangered medicinal orchid from north-east India and its comparison with related Dendrobium species

The medicinal orchid genus Dendrobium belonging to the Orchidaceae family is a huge genus comprising about 800–1,500 species. To better illustrate the species status in the genus Dendrobium, a comparative analysis of 33 available chloroplast genomes retrieved from NCBI RefSeq database was compared w...

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Autores principales: Konhar, Ruchishree, Debnath, Manish, Vishwakarma, Santosh, Bhattacharjee, Atanu, Sundar, Durai, Tandon, Pramod, Dash, Debasis, Biswal, Devendra Kumar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2019
Materias:
Bioinformatics
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6830405/
https://www.ncbi.nlm.nih.gov/pubmed/31695964
http://dx.doi.org/10.7717/peerj.7756
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author Konhar, Ruchishree
Debnath, Manish
Vishwakarma, Santosh
Bhattacharjee, Atanu
Sundar, Durai
Tandon, Pramod
Dash, Debasis
Biswal, Devendra Kumar
author_facet Konhar, Ruchishree
Debnath, Manish
Vishwakarma, Santosh
Bhattacharjee, Atanu
Sundar, Durai
Tandon, Pramod
Dash, Debasis
Biswal, Devendra Kumar
author_sort Konhar, Ruchishree
collection PubMed
description The medicinal orchid genus Dendrobium belonging to the Orchidaceae family is a huge genus comprising about 800–1,500 species. To better illustrate the species status in the genus Dendrobium, a comparative analysis of 33 available chloroplast genomes retrieved from NCBI RefSeq database was compared with that of the first complete chloroplast genome of D. nobile from north-east India based on next-generation sequencing methods (Illumina HiSeq 2500-PE150). Our results provide comparative chloroplast genomic information for taxonomical identification, alignment-free phylogenomic inference and other statistical features of Dendrobium plastomes, which can also provide valuable information on their mutational events and sequence divergence.
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spelling pubmed-68304052019-11-06 The complete chloroplast genome of Dendrobium nobile, an endangered medicinal orchid from north-east India and its comparison with related Dendrobium species Konhar, Ruchishree Debnath, Manish Vishwakarma, Santosh Bhattacharjee, Atanu Sundar, Durai Tandon, Pramod Dash, Debasis Biswal, Devendra Kumar PeerJ Bioinformatics The medicinal orchid genus Dendrobium belonging to the Orchidaceae family is a huge genus comprising about 800–1,500 species. To better illustrate the species status in the genus Dendrobium, a comparative analysis of 33 available chloroplast genomes retrieved from NCBI RefSeq database was compared with that of the first complete chloroplast genome of D. nobile from north-east India based on next-generation sequencing methods (Illumina HiSeq 2500-PE150). Our results provide comparative chloroplast genomic information for taxonomical identification, alignment-free phylogenomic inference and other statistical features of Dendrobium plastomes, which can also provide valuable information on their mutational events and sequence divergence. PeerJ Inc. 2019-11-01 /pmc/articles/PMC6830405/ /pubmed/31695964 http://dx.doi.org/10.7717/peerj.7756 Text en ©2019 Konhar et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Bioinformatics
Konhar, Ruchishree
Debnath, Manish
Vishwakarma, Santosh
Bhattacharjee, Atanu
Sundar, Durai
Tandon, Pramod
Dash, Debasis
Biswal, Devendra Kumar
The complete chloroplast genome of Dendrobium nobile, an endangered medicinal orchid from north-east India and its comparison with related Dendrobium species
title The complete chloroplast genome of Dendrobium nobile, an endangered medicinal orchid from north-east India and its comparison with related Dendrobium species
title_full The complete chloroplast genome of Dendrobium nobile, an endangered medicinal orchid from north-east India and its comparison with related Dendrobium species
title_fullStr The complete chloroplast genome of Dendrobium nobile, an endangered medicinal orchid from north-east India and its comparison with related Dendrobium species
title_full_unstemmed The complete chloroplast genome of Dendrobium nobile, an endangered medicinal orchid from north-east India and its comparison with related Dendrobium species
title_short The complete chloroplast genome of Dendrobium nobile, an endangered medicinal orchid from north-east India and its comparison with related Dendrobium species
title_sort complete chloroplast genome of dendrobium nobile, an endangered medicinal orchid from north-east india and its comparison with related dendrobium species
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6830405/
https://www.ncbi.nlm.nih.gov/pubmed/31695964
http://dx.doi.org/10.7717/peerj.7756
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