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DISCOVER: A facile structure-based screening method for vinyl compound producing microbes
Here we report a novel structure-based microbial screening method for vinyl compound discovery, DISCOVER (direct screening method based on coupling reactions for vinyl compound producers). Through a two-step screening procedure based on selective coupling reactions of terminal alkenes, the thiol-ene...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6831603/ https://www.ncbi.nlm.nih.gov/pubmed/31690766 http://dx.doi.org/10.1038/s41598-019-52518-6 |
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author | Aso, Yuji Sano, Mei Kuroda, Hikari Ohara, Hitomi Ando, Hiroshi Matsumoto, Keiji |
author_facet | Aso, Yuji Sano, Mei Kuroda, Hikari Ohara, Hitomi Ando, Hiroshi Matsumoto, Keiji |
author_sort | Aso, Yuji |
collection | PubMed |
description | Here we report a novel structure-based microbial screening method for vinyl compound discovery, DISCOVER (direct screening method based on coupling reactions for vinyl compound producers). Through a two-step screening procedure based on selective coupling reactions of terminal alkenes, the thiol-ene reaction (1(st) step of screening) and Mizoroki-Heck reaction, followed by iodine test (2(nd) step of screening), microbes producing vinyl compounds like itaconic acid (IA) can be isolated from soil samples. In the 1(st) step of screening, soil sources are plated on agar medium supplemented with an antimicrobial agent, α-thioglycerol (TG), and a radical initiator, VA-044 (VA). In the 2(nd) step of screening, vinyl compounds produced in the cultures are labelled with iodobenzene via the Mizoroki-Heck reaction, followed by an iodine test, leading to the detection and characterisation of labelled products. We evaluated the validity of DISCOVER using IA and its producer Aspergillus terreus. Experimental data supported our hypothesis that IA reacts with TG in the medium via the thiol-ene reaction and consequently, A. terreus rapidly forms colonies on the agar medium because of the loss of the antimicrobial activity of TG. Using DISCOVER, high throughput and selective isolation of A. terreus strains producing IA was possible from soils. |
format | Online Article Text |
id | pubmed-6831603 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-68316032019-11-13 DISCOVER: A facile structure-based screening method for vinyl compound producing microbes Aso, Yuji Sano, Mei Kuroda, Hikari Ohara, Hitomi Ando, Hiroshi Matsumoto, Keiji Sci Rep Article Here we report a novel structure-based microbial screening method for vinyl compound discovery, DISCOVER (direct screening method based on coupling reactions for vinyl compound producers). Through a two-step screening procedure based on selective coupling reactions of terminal alkenes, the thiol-ene reaction (1(st) step of screening) and Mizoroki-Heck reaction, followed by iodine test (2(nd) step of screening), microbes producing vinyl compounds like itaconic acid (IA) can be isolated from soil samples. In the 1(st) step of screening, soil sources are plated on agar medium supplemented with an antimicrobial agent, α-thioglycerol (TG), and a radical initiator, VA-044 (VA). In the 2(nd) step of screening, vinyl compounds produced in the cultures are labelled with iodobenzene via the Mizoroki-Heck reaction, followed by an iodine test, leading to the detection and characterisation of labelled products. We evaluated the validity of DISCOVER using IA and its producer Aspergillus terreus. Experimental data supported our hypothesis that IA reacts with TG in the medium via the thiol-ene reaction and consequently, A. terreus rapidly forms colonies on the agar medium because of the loss of the antimicrobial activity of TG. Using DISCOVER, high throughput and selective isolation of A. terreus strains producing IA was possible from soils. Nature Publishing Group UK 2019-11-05 /pmc/articles/PMC6831603/ /pubmed/31690766 http://dx.doi.org/10.1038/s41598-019-52518-6 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Aso, Yuji Sano, Mei Kuroda, Hikari Ohara, Hitomi Ando, Hiroshi Matsumoto, Keiji DISCOVER: A facile structure-based screening method for vinyl compound producing microbes |
title | DISCOVER: A facile structure-based screening method for vinyl compound producing microbes |
title_full | DISCOVER: A facile structure-based screening method for vinyl compound producing microbes |
title_fullStr | DISCOVER: A facile structure-based screening method for vinyl compound producing microbes |
title_full_unstemmed | DISCOVER: A facile structure-based screening method for vinyl compound producing microbes |
title_short | DISCOVER: A facile structure-based screening method for vinyl compound producing microbes |
title_sort | discover: a facile structure-based screening method for vinyl compound producing microbes |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6831603/ https://www.ncbi.nlm.nih.gov/pubmed/31690766 http://dx.doi.org/10.1038/s41598-019-52518-6 |
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