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Identification of STAB1 in Multiple Datasets as a Prognostic Factor for Cytogenetically Normal AML: Mechanism and Drug Indications

Cytogenetically normal acute myeloid leukemia (CN-AML) presents with diverse outcomes in different patients and is categorized as an intermediate prognosis group. It is important to identify prognostic factors for CN-AML risk stratification. In this study, using the TCGA CN-AML dataset, we found tha...

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Autores principales: Lin, Sheng-Yan, Hu, Fei-Fei, Miao, Ya-Ru, Hu, Hui, Lei, Qian, Zhang, Qiong, Li, Qiubai, Wang, Hongxiang, Chen, Zhichao, Guo, An-Yuan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society of Gene & Cell Therapy 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6831857/
https://www.ncbi.nlm.nih.gov/pubmed/31670197
http://dx.doi.org/10.1016/j.omtn.2019.09.014
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author Lin, Sheng-Yan
Hu, Fei-Fei
Miao, Ya-Ru
Hu, Hui
Lei, Qian
Zhang, Qiong
Li, Qiubai
Wang, Hongxiang
Chen, Zhichao
Guo, An-Yuan
author_facet Lin, Sheng-Yan
Hu, Fei-Fei
Miao, Ya-Ru
Hu, Hui
Lei, Qian
Zhang, Qiong
Li, Qiubai
Wang, Hongxiang
Chen, Zhichao
Guo, An-Yuan
author_sort Lin, Sheng-Yan
collection PubMed
description Cytogenetically normal acute myeloid leukemia (CN-AML) presents with diverse outcomes in different patients and is categorized as an intermediate prognosis group. It is important to identify prognostic factors for CN-AML risk stratification. In this study, using the TCGA CN-AML dataset, we found that the scavenger receptor stabilin-1 (STAB1) is a prognostic factor for poor outcomes and validated it in three other independent CN-AML datasets. The high STAB1 expression (STAB1(high)) group had shorter event-free survival compared with the low STAB1 expression (STAB1(low)) group in both the TCGA dataset (n = 79; p = 0.0478) and GEO: GSE6891 dataset (n = 187; p = 0.0354). Differential expression analysis between the STAB1(high) and STAB1(low) groups revealed that upregulated genes in the STAB1(high) group were enriched in pathways related to cell adhesion and migration and immune responses. We confirmed that STAB1 suppression inhibits cell growth in KG1a and NB4 leukemia cells. Expression correlation analyses between STAB1 and cancer drug targets suggested that patients in the STAB1(low) group are more sensitive to the BCL2 inhibitor venetoclax, and we confirmed it in cell lines. In conclusion, we identified STAB1 as a prognostic factor for CN-AML in multiple datasets, explored its underlying mechanism, and provided potential therapeutic indications.
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spelling pubmed-68318572019-11-08 Identification of STAB1 in Multiple Datasets as a Prognostic Factor for Cytogenetically Normal AML: Mechanism and Drug Indications Lin, Sheng-Yan Hu, Fei-Fei Miao, Ya-Ru Hu, Hui Lei, Qian Zhang, Qiong Li, Qiubai Wang, Hongxiang Chen, Zhichao Guo, An-Yuan Mol Ther Nucleic Acids Article Cytogenetically normal acute myeloid leukemia (CN-AML) presents with diverse outcomes in different patients and is categorized as an intermediate prognosis group. It is important to identify prognostic factors for CN-AML risk stratification. In this study, using the TCGA CN-AML dataset, we found that the scavenger receptor stabilin-1 (STAB1) is a prognostic factor for poor outcomes and validated it in three other independent CN-AML datasets. The high STAB1 expression (STAB1(high)) group had shorter event-free survival compared with the low STAB1 expression (STAB1(low)) group in both the TCGA dataset (n = 79; p = 0.0478) and GEO: GSE6891 dataset (n = 187; p = 0.0354). Differential expression analysis between the STAB1(high) and STAB1(low) groups revealed that upregulated genes in the STAB1(high) group were enriched in pathways related to cell adhesion and migration and immune responses. We confirmed that STAB1 suppression inhibits cell growth in KG1a and NB4 leukemia cells. Expression correlation analyses between STAB1 and cancer drug targets suggested that patients in the STAB1(low) group are more sensitive to the BCL2 inhibitor venetoclax, and we confirmed it in cell lines. In conclusion, we identified STAB1 as a prognostic factor for CN-AML in multiple datasets, explored its underlying mechanism, and provided potential therapeutic indications. American Society of Gene & Cell Therapy 2019-09-23 /pmc/articles/PMC6831857/ /pubmed/31670197 http://dx.doi.org/10.1016/j.omtn.2019.09.014 Text en © 2019 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Article
Lin, Sheng-Yan
Hu, Fei-Fei
Miao, Ya-Ru
Hu, Hui
Lei, Qian
Zhang, Qiong
Li, Qiubai
Wang, Hongxiang
Chen, Zhichao
Guo, An-Yuan
Identification of STAB1 in Multiple Datasets as a Prognostic Factor for Cytogenetically Normal AML: Mechanism and Drug Indications
title Identification of STAB1 in Multiple Datasets as a Prognostic Factor for Cytogenetically Normal AML: Mechanism and Drug Indications
title_full Identification of STAB1 in Multiple Datasets as a Prognostic Factor for Cytogenetically Normal AML: Mechanism and Drug Indications
title_fullStr Identification of STAB1 in Multiple Datasets as a Prognostic Factor for Cytogenetically Normal AML: Mechanism and Drug Indications
title_full_unstemmed Identification of STAB1 in Multiple Datasets as a Prognostic Factor for Cytogenetically Normal AML: Mechanism and Drug Indications
title_short Identification of STAB1 in Multiple Datasets as a Prognostic Factor for Cytogenetically Normal AML: Mechanism and Drug Indications
title_sort identification of stab1 in multiple datasets as a prognostic factor for cytogenetically normal aml: mechanism and drug indications
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6831857/
https://www.ncbi.nlm.nih.gov/pubmed/31670197
http://dx.doi.org/10.1016/j.omtn.2019.09.014
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