Mash Screen: high-throughput sequence containment estimation for genome discovery

The MinHash algorithm has proven effective for rapidly estimating the resemblance of two genomes or metagenomes. However, this method cannot reliably estimate the containment of a genome within a metagenome. Here, we describe an online algorithm capable of measuring the containment of genomes and pr...

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Detalles Bibliográficos
Autores principales: Ondov, Brian D., Starrett, Gabriel J., Sappington, Anna, Kostic, Aleksandra, Koren, Sergey, Buck, Christopher B., Phillippy, Adam M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2019
Materias:
Method
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6833257/
https://www.ncbi.nlm.nih.gov/pubmed/31690338
http://dx.doi.org/10.1186/s13059-019-1841-x

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6833257/
https://www.ncbi.nlm.nih.gov/pubmed/31690338
http://dx.doi.org/10.1186/s13059-019-1841-x

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