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Instantaneous and non-destructive relative water content estimation from deep learning applied to resonant ultrasonic spectra of plant leaves

BACKGROUND: Non-contact resonant ultrasound spectroscopy (NC-RUS) has been proven as a reliable technique for the dynamic determination of leaf water status. It has been already tested in more than 50 plant species. In parallel, relative water content (RWC) is highly used in the ecophysiological fie...

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Autores principales: Fariñas, María Dolores, Jimenez-Carretero, Daniel, Sancho-Knapik, Domingo, Peguero-Pina, José Javier, Gil-Pelegrín, Eustaquio, Gómez Álvarez-Arenas, Tomás
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6836334/
https://www.ncbi.nlm.nih.gov/pubmed/31709000
http://dx.doi.org/10.1186/s13007-019-0511-z
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author Fariñas, María Dolores
Jimenez-Carretero, Daniel
Sancho-Knapik, Domingo
Peguero-Pina, José Javier
Gil-Pelegrín, Eustaquio
Gómez Álvarez-Arenas, Tomás
author_facet Fariñas, María Dolores
Jimenez-Carretero, Daniel
Sancho-Knapik, Domingo
Peguero-Pina, José Javier
Gil-Pelegrín, Eustaquio
Gómez Álvarez-Arenas, Tomás
author_sort Fariñas, María Dolores
collection PubMed
description BACKGROUND: Non-contact resonant ultrasound spectroscopy (NC-RUS) has been proven as a reliable technique for the dynamic determination of leaf water status. It has been already tested in more than 50 plant species. In parallel, relative water content (RWC) is highly used in the ecophysiological field to describe the degree of water saturation in plant leaves. Obtaining RWC implies a cumbersome and destructive process that can introduce artefacts and cannot be determined instantaneously. RESULTS: Here, we present a method for the estimation of RWC in plant leaves from non-contact resonant ultrasound spectroscopy (NC-RUS) data. This technique enables to collect transmission coefficient in a [0.15–1.6] MHz frequency range from plant leaves in a non-invasive, non-destructive and rapid way. Two different approaches for the proposed method are evaluated: convolutional neural networks (CNN) and random forest (RF). While CNN takes the entire ultrasonic spectra acquired from the leaves, RF only uses four relevant parameters resulted from the transmission coefficient data. Both methods were tested successfully in Viburnum tinus leaf samples with Pearson’s correlations between 0.92 and 0.84. CONCLUSIONS: This study showed that the combination of NC-RUS technique with deep learning algorithms is a robust tool for the instantaneous, accurate and non-destructive determination of RWC in plant leaves.
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spelling pubmed-68363342019-11-08 Instantaneous and non-destructive relative water content estimation from deep learning applied to resonant ultrasonic spectra of plant leaves Fariñas, María Dolores Jimenez-Carretero, Daniel Sancho-Knapik, Domingo Peguero-Pina, José Javier Gil-Pelegrín, Eustaquio Gómez Álvarez-Arenas, Tomás Plant Methods Research BACKGROUND: Non-contact resonant ultrasound spectroscopy (NC-RUS) has been proven as a reliable technique for the dynamic determination of leaf water status. It has been already tested in more than 50 plant species. In parallel, relative water content (RWC) is highly used in the ecophysiological field to describe the degree of water saturation in plant leaves. Obtaining RWC implies a cumbersome and destructive process that can introduce artefacts and cannot be determined instantaneously. RESULTS: Here, we present a method for the estimation of RWC in plant leaves from non-contact resonant ultrasound spectroscopy (NC-RUS) data. This technique enables to collect transmission coefficient in a [0.15–1.6] MHz frequency range from plant leaves in a non-invasive, non-destructive and rapid way. Two different approaches for the proposed method are evaluated: convolutional neural networks (CNN) and random forest (RF). While CNN takes the entire ultrasonic spectra acquired from the leaves, RF only uses four relevant parameters resulted from the transmission coefficient data. Both methods were tested successfully in Viburnum tinus leaf samples with Pearson’s correlations between 0.92 and 0.84. CONCLUSIONS: This study showed that the combination of NC-RUS technique with deep learning algorithms is a robust tool for the instantaneous, accurate and non-destructive determination of RWC in plant leaves. BioMed Central 2019-11-07 /pmc/articles/PMC6836334/ /pubmed/31709000 http://dx.doi.org/10.1186/s13007-019-0511-z Text en © The Author(s) 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research
Fariñas, María Dolores
Jimenez-Carretero, Daniel
Sancho-Knapik, Domingo
Peguero-Pina, José Javier
Gil-Pelegrín, Eustaquio
Gómez Álvarez-Arenas, Tomás
Instantaneous and non-destructive relative water content estimation from deep learning applied to resonant ultrasonic spectra of plant leaves
title Instantaneous and non-destructive relative water content estimation from deep learning applied to resonant ultrasonic spectra of plant leaves
title_full Instantaneous and non-destructive relative water content estimation from deep learning applied to resonant ultrasonic spectra of plant leaves
title_fullStr Instantaneous and non-destructive relative water content estimation from deep learning applied to resonant ultrasonic spectra of plant leaves
title_full_unstemmed Instantaneous and non-destructive relative water content estimation from deep learning applied to resonant ultrasonic spectra of plant leaves
title_short Instantaneous and non-destructive relative water content estimation from deep learning applied to resonant ultrasonic spectra of plant leaves
title_sort instantaneous and non-destructive relative water content estimation from deep learning applied to resonant ultrasonic spectra of plant leaves
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6836334/
https://www.ncbi.nlm.nih.gov/pubmed/31709000
http://dx.doi.org/10.1186/s13007-019-0511-z
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