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Development and validation of a Bayesian survival model for inclusion body myositis

BACKGROUND: Associations between disease characteristics and payer-relevant outcomes can be difficult to establish for rare and progressive chronic diseases with sparse available data. We developed an exploratory bridging model to predict premature mortality from disease characteristics, and using i...

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Autores principales: Capkun, Gorana, Schmidt, Jens, Ghosh, Shubhro, Sharma, Harsh, Obadia, Thomas, de Vera, Ana, Risson, Valery, Amzal, Billy
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6836518/
https://www.ncbi.nlm.nih.gov/pubmed/31694651
http://dx.doi.org/10.1186/s12976-019-0114-4
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author Capkun, Gorana
Schmidt, Jens
Ghosh, Shubhro
Sharma, Harsh
Obadia, Thomas
de Vera, Ana
Risson, Valery
Amzal, Billy
author_facet Capkun, Gorana
Schmidt, Jens
Ghosh, Shubhro
Sharma, Harsh
Obadia, Thomas
de Vera, Ana
Risson, Valery
Amzal, Billy
author_sort Capkun, Gorana
collection PubMed
description BACKGROUND: Associations between disease characteristics and payer-relevant outcomes can be difficult to establish for rare and progressive chronic diseases with sparse available data. We developed an exploratory bridging model to predict premature mortality from disease characteristics, and using inclusion body myositis (IBM) as a representative case study. METHODS: Candidate variables that may be potentially associated with premature mortality were identified by disease experts and from the IBM literature. Interdependency between candidate variables in IBM patients were assessed using existing patient-level data. A Bayesian survival model for the IBM population was developed with identified variables as predictors for premature mortality in the model. For model selection and external validation, model predictions were compared to published mortality data in IBM patient cohorts. After validation, the final model was used to simulate the increased risk of premature death in IBM patients. Baseline survival was based on age- and gender-specific survival curves for the general population in Western countries as reported by the World Health Organisation. RESULTS: Presence of dysphagia, aspiration pneumonia, falls, being wheelchair-bound and 6-min walking distance (6MWD in meters) were identified as candidate variables to be used as predictors for premature mortality based on inputs received from disease experts and literature. There was limited correlation between these functional performance measures, which were therefore treated as independent variables in the model. Based on the Bayesian survival model, among all candidate variables, presence of dysphagia and decrease in 6MWD [m] were associated with poorer survival with contributing hazard ratios (HR) 1.61 (95% credible interval [CrI]: 0.84–3.50) and 2.48 (95% CrI: 1.27–5.00) respectively. Excess mortality simulated in an IBM cohort vs. an age- and gender matched general-population cohort was 4.03 (95% prediction interval 1.37–10.61). CONCLUSIONS: For IBM patients, results suggest an increased risk of premature death compared with the general population of the same age and gender. In the absence of hard data, bridging modelling generated survival predictions by combining relevant information. The methodological principle would be applicable to the analysis of associations between disease characteristics and payer-relevant outcomes in progressive chronic and rare diseases. Studies with lifetime follow-up would be needed to confirm the modelling results.
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spelling pubmed-68365182019-11-12 Development and validation of a Bayesian survival model for inclusion body myositis Capkun, Gorana Schmidt, Jens Ghosh, Shubhro Sharma, Harsh Obadia, Thomas de Vera, Ana Risson, Valery Amzal, Billy Theor Biol Med Model Research BACKGROUND: Associations between disease characteristics and payer-relevant outcomes can be difficult to establish for rare and progressive chronic diseases with sparse available data. We developed an exploratory bridging model to predict premature mortality from disease characteristics, and using inclusion body myositis (IBM) as a representative case study. METHODS: Candidate variables that may be potentially associated with premature mortality were identified by disease experts and from the IBM literature. Interdependency between candidate variables in IBM patients were assessed using existing patient-level data. A Bayesian survival model for the IBM population was developed with identified variables as predictors for premature mortality in the model. For model selection and external validation, model predictions were compared to published mortality data in IBM patient cohorts. After validation, the final model was used to simulate the increased risk of premature death in IBM patients. Baseline survival was based on age- and gender-specific survival curves for the general population in Western countries as reported by the World Health Organisation. RESULTS: Presence of dysphagia, aspiration pneumonia, falls, being wheelchair-bound and 6-min walking distance (6MWD in meters) were identified as candidate variables to be used as predictors for premature mortality based on inputs received from disease experts and literature. There was limited correlation between these functional performance measures, which were therefore treated as independent variables in the model. Based on the Bayesian survival model, among all candidate variables, presence of dysphagia and decrease in 6MWD [m] were associated with poorer survival with contributing hazard ratios (HR) 1.61 (95% credible interval [CrI]: 0.84–3.50) and 2.48 (95% CrI: 1.27–5.00) respectively. Excess mortality simulated in an IBM cohort vs. an age- and gender matched general-population cohort was 4.03 (95% prediction interval 1.37–10.61). CONCLUSIONS: For IBM patients, results suggest an increased risk of premature death compared with the general population of the same age and gender. In the absence of hard data, bridging modelling generated survival predictions by combining relevant information. The methodological principle would be applicable to the analysis of associations between disease characteristics and payer-relevant outcomes in progressive chronic and rare diseases. Studies with lifetime follow-up would be needed to confirm the modelling results. BioMed Central 2019-11-07 /pmc/articles/PMC6836518/ /pubmed/31694651 http://dx.doi.org/10.1186/s12976-019-0114-4 Text en © The Author(s). 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research
Capkun, Gorana
Schmidt, Jens
Ghosh, Shubhro
Sharma, Harsh
Obadia, Thomas
de Vera, Ana
Risson, Valery
Amzal, Billy
Development and validation of a Bayesian survival model for inclusion body myositis
title Development and validation of a Bayesian survival model for inclusion body myositis
title_full Development and validation of a Bayesian survival model for inclusion body myositis
title_fullStr Development and validation of a Bayesian survival model for inclusion body myositis
title_full_unstemmed Development and validation of a Bayesian survival model for inclusion body myositis
title_short Development and validation of a Bayesian survival model for inclusion body myositis
title_sort development and validation of a bayesian survival model for inclusion body myositis
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6836518/
https://www.ncbi.nlm.nih.gov/pubmed/31694651
http://dx.doi.org/10.1186/s12976-019-0114-4
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