Cargando…

Tumor grading of soft tissue sarcomas using MRI-based radiomics

BACKGROUND: Treatment decisions for multimodal therapy in soft tissue sarcoma (STS) patients greatly depend on the differentiation between low-grade and high-grade tumors. We developed MRI-based radiomics grading models for the differentiation between low-grade (G1) and high-grade (G2/G3) STS. METHO...

Descripción completa

Detalles Bibliográficos
Autores principales: Peeken, Jan C., Spraker, Matthew B., Knebel, Carolin, Dapper, Hendrik, Pfeiffer, Daniela, Devecka, Michal, Thamer, Ahmed, Shouman, Mohamed A., Ott, Armin, von Eisenhart-Rothe, Rüdiger, Nüsslin, Fridtjof, Mayr, Nina A., Nyflot, Matthew J., Combs, Stephanie E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6838361/
https://www.ncbi.nlm.nih.gov/pubmed/31522983
http://dx.doi.org/10.1016/j.ebiom.2019.08.059
_version_ 1783467207272955904
author Peeken, Jan C.
Spraker, Matthew B.
Knebel, Carolin
Dapper, Hendrik
Pfeiffer, Daniela
Devecka, Michal
Thamer, Ahmed
Shouman, Mohamed A.
Ott, Armin
von Eisenhart-Rothe, Rüdiger
Nüsslin, Fridtjof
Mayr, Nina A.
Nyflot, Matthew J.
Combs, Stephanie E.
author_facet Peeken, Jan C.
Spraker, Matthew B.
Knebel, Carolin
Dapper, Hendrik
Pfeiffer, Daniela
Devecka, Michal
Thamer, Ahmed
Shouman, Mohamed A.
Ott, Armin
von Eisenhart-Rothe, Rüdiger
Nüsslin, Fridtjof
Mayr, Nina A.
Nyflot, Matthew J.
Combs, Stephanie E.
author_sort Peeken, Jan C.
collection PubMed
description BACKGROUND: Treatment decisions for multimodal therapy in soft tissue sarcoma (STS) patients greatly depend on the differentiation between low-grade and high-grade tumors. We developed MRI-based radiomics grading models for the differentiation between low-grade (G1) and high-grade (G2/G3) STS. METHODS: The study was registered at ClinicalTrials.gov (number NCT03798795). Contrast-enhanced T1-weighted fat saturated (T1FSGd), fat-saturated T2-weighted (T2FS) MRI sequences, and tumor grading following the French Federation of Cancer Centers Sarcoma Group obtained from pre-therapeutic biopsies were gathered from two independent retrospective patient cohorts. Volumes of interest were manually segmented. After preprocessing, 1394 radiomics features were extracted from each sequence. Features unstable in 21 independent multiple-segmentations were excluded. Least absolute shrinkage and selection operator models were developed using nested cross-validation on a training patient cohort (122 patients). The influence of ComBatHarmonization was assessed for correction of batch effects. FINDINGS: Three radiomic models based on T2FS, T1FSGd and a combined model achieved predictive performances with an area under the receiver operator characteristic curve (AUC) of 0.78, 0.69, and 0.76 on the independent validation set (103 patients), respectively. The T2FS-based model showed the best reproducibility. The radiomics model involving T1FSGd-based features achieved significant patient stratification. Combining the T2FS radiomic model into a nomogram with clinical staging improved prognostic performance and the clinical net benefit above clinical staging alone. INTERPRETATION: MRI-based radiomics tumor grading models effectively classify low-grade and high-grade soft tissue sarcomas. FUND: The authors received support by the medical faculty of the Technical University of Munich and the German Cancer Consortium.
format Online
Article
Text
id pubmed-6838361
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-68383612019-11-12 Tumor grading of soft tissue sarcomas using MRI-based radiomics Peeken, Jan C. Spraker, Matthew B. Knebel, Carolin Dapper, Hendrik Pfeiffer, Daniela Devecka, Michal Thamer, Ahmed Shouman, Mohamed A. Ott, Armin von Eisenhart-Rothe, Rüdiger Nüsslin, Fridtjof Mayr, Nina A. Nyflot, Matthew J. Combs, Stephanie E. EBioMedicine Research paper BACKGROUND: Treatment decisions for multimodal therapy in soft tissue sarcoma (STS) patients greatly depend on the differentiation between low-grade and high-grade tumors. We developed MRI-based radiomics grading models for the differentiation between low-grade (G1) and high-grade (G2/G3) STS. METHODS: The study was registered at ClinicalTrials.gov (number NCT03798795). Contrast-enhanced T1-weighted fat saturated (T1FSGd), fat-saturated T2-weighted (T2FS) MRI sequences, and tumor grading following the French Federation of Cancer Centers Sarcoma Group obtained from pre-therapeutic biopsies were gathered from two independent retrospective patient cohorts. Volumes of interest were manually segmented. After preprocessing, 1394 radiomics features were extracted from each sequence. Features unstable in 21 independent multiple-segmentations were excluded. Least absolute shrinkage and selection operator models were developed using nested cross-validation on a training patient cohort (122 patients). The influence of ComBatHarmonization was assessed for correction of batch effects. FINDINGS: Three radiomic models based on T2FS, T1FSGd and a combined model achieved predictive performances with an area under the receiver operator characteristic curve (AUC) of 0.78, 0.69, and 0.76 on the independent validation set (103 patients), respectively. The T2FS-based model showed the best reproducibility. The radiomics model involving T1FSGd-based features achieved significant patient stratification. Combining the T2FS radiomic model into a nomogram with clinical staging improved prognostic performance and the clinical net benefit above clinical staging alone. INTERPRETATION: MRI-based radiomics tumor grading models effectively classify low-grade and high-grade soft tissue sarcomas. FUND: The authors received support by the medical faculty of the Technical University of Munich and the German Cancer Consortium. Elsevier 2019-09-12 /pmc/articles/PMC6838361/ /pubmed/31522983 http://dx.doi.org/10.1016/j.ebiom.2019.08.059 Text en © 2019 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Research paper
Peeken, Jan C.
Spraker, Matthew B.
Knebel, Carolin
Dapper, Hendrik
Pfeiffer, Daniela
Devecka, Michal
Thamer, Ahmed
Shouman, Mohamed A.
Ott, Armin
von Eisenhart-Rothe, Rüdiger
Nüsslin, Fridtjof
Mayr, Nina A.
Nyflot, Matthew J.
Combs, Stephanie E.
Tumor grading of soft tissue sarcomas using MRI-based radiomics
title Tumor grading of soft tissue sarcomas using MRI-based radiomics
title_full Tumor grading of soft tissue sarcomas using MRI-based radiomics
title_fullStr Tumor grading of soft tissue sarcomas using MRI-based radiomics
title_full_unstemmed Tumor grading of soft tissue sarcomas using MRI-based radiomics
title_short Tumor grading of soft tissue sarcomas using MRI-based radiomics
title_sort tumor grading of soft tissue sarcomas using mri-based radiomics
topic Research paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6838361/
https://www.ncbi.nlm.nih.gov/pubmed/31522983
http://dx.doi.org/10.1016/j.ebiom.2019.08.059
work_keys_str_mv AT peekenjanc tumorgradingofsofttissuesarcomasusingmribasedradiomics
AT sprakermatthewb tumorgradingofsofttissuesarcomasusingmribasedradiomics
AT knebelcarolin tumorgradingofsofttissuesarcomasusingmribasedradiomics
AT dapperhendrik tumorgradingofsofttissuesarcomasusingmribasedradiomics
AT pfeifferdaniela tumorgradingofsofttissuesarcomasusingmribasedradiomics
AT deveckamichal tumorgradingofsofttissuesarcomasusingmribasedradiomics
AT thamerahmed tumorgradingofsofttissuesarcomasusingmribasedradiomics
AT shoumanmohameda tumorgradingofsofttissuesarcomasusingmribasedradiomics
AT ottarmin tumorgradingofsofttissuesarcomasusingmribasedradiomics
AT voneisenhartrotherudiger tumorgradingofsofttissuesarcomasusingmribasedradiomics
AT nusslinfridtjof tumorgradingofsofttissuesarcomasusingmribasedradiomics
AT mayrninaa tumorgradingofsofttissuesarcomasusingmribasedradiomics
AT nyflotmatthewj tumorgradingofsofttissuesarcomasusingmribasedradiomics
AT combsstephaniee tumorgradingofsofttissuesarcomasusingmribasedradiomics