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De novo whole genome sequencing data of two mangrove-isolated microalgae from Terengganu coastal waters
Interest in harvesting potential benefits from microalgae renders it necessary to have the many ecological niches of a single species to be investigated. This dataset comprises de novo whole genome assembly of two mangrove-isolated microalgae (from division Chlorophyta); Chlorella vulgaris UMT-M1 an...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6838400/ https://www.ncbi.nlm.nih.gov/pubmed/31720332 http://dx.doi.org/10.1016/j.dib.2019.104680 |
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author | Teh, Kit Yinn Afifudeen, C.L.Wan Aziz, Ahmad Wong, Li Lian Loh, Saw Hong Cha, Thye San |
author_facet | Teh, Kit Yinn Afifudeen, C.L.Wan Aziz, Ahmad Wong, Li Lian Loh, Saw Hong Cha, Thye San |
author_sort | Teh, Kit Yinn |
collection | PubMed |
description | Interest in harvesting potential benefits from microalgae renders it necessary to have the many ecological niches of a single species to be investigated. This dataset comprises de novo whole genome assembly of two mangrove-isolated microalgae (from division Chlorophyta); Chlorella vulgaris UMT-M1 and Messastrum gracile SE-MC4 from Universiti Malaysia Terengganu, Malaysia. Library runs were carried out with 2 × 150 base paired-ends reads, whereas sequencing was conducted using Illumina Novaseq 2500 platform. Sequencing yielded raw reads amounting to ∼11 Gb in total bases for both species and was further assembled de novo. Genome assembly resulted in a 50.15 Mbp and 60.83 Mbp genome size for UMT-M1 and SE-MC4, respectively. All filtered and assembled genomic data sequences have been submitted to National Centre for Biotechnology Information (NCBI) and can be located at DDBJ/ENA/GenBank under the accession of VJNP00000000 (UMT-M1) and VIYE00000000 (SE-MC4). |
format | Online Article Text |
id | pubmed-6838400 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-68384002019-11-12 De novo whole genome sequencing data of two mangrove-isolated microalgae from Terengganu coastal waters Teh, Kit Yinn Afifudeen, C.L.Wan Aziz, Ahmad Wong, Li Lian Loh, Saw Hong Cha, Thye San Data Brief Agricultural and Biological Science Interest in harvesting potential benefits from microalgae renders it necessary to have the many ecological niches of a single species to be investigated. This dataset comprises de novo whole genome assembly of two mangrove-isolated microalgae (from division Chlorophyta); Chlorella vulgaris UMT-M1 and Messastrum gracile SE-MC4 from Universiti Malaysia Terengganu, Malaysia. Library runs were carried out with 2 × 150 base paired-ends reads, whereas sequencing was conducted using Illumina Novaseq 2500 platform. Sequencing yielded raw reads amounting to ∼11 Gb in total bases for both species and was further assembled de novo. Genome assembly resulted in a 50.15 Mbp and 60.83 Mbp genome size for UMT-M1 and SE-MC4, respectively. All filtered and assembled genomic data sequences have been submitted to National Centre for Biotechnology Information (NCBI) and can be located at DDBJ/ENA/GenBank under the accession of VJNP00000000 (UMT-M1) and VIYE00000000 (SE-MC4). Elsevier 2019-10-18 /pmc/articles/PMC6838400/ /pubmed/31720332 http://dx.doi.org/10.1016/j.dib.2019.104680 Text en © 2019 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Agricultural and Biological Science Teh, Kit Yinn Afifudeen, C.L.Wan Aziz, Ahmad Wong, Li Lian Loh, Saw Hong Cha, Thye San De novo whole genome sequencing data of two mangrove-isolated microalgae from Terengganu coastal waters |
title | De novo whole genome sequencing data of two mangrove-isolated microalgae from Terengganu coastal waters |
title_full | De novo whole genome sequencing data of two mangrove-isolated microalgae from Terengganu coastal waters |
title_fullStr | De novo whole genome sequencing data of two mangrove-isolated microalgae from Terengganu coastal waters |
title_full_unstemmed | De novo whole genome sequencing data of two mangrove-isolated microalgae from Terengganu coastal waters |
title_short | De novo whole genome sequencing data of two mangrove-isolated microalgae from Terengganu coastal waters |
title_sort | de novo whole genome sequencing data of two mangrove-isolated microalgae from terengganu coastal waters |
topic | Agricultural and Biological Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6838400/ https://www.ncbi.nlm.nih.gov/pubmed/31720332 http://dx.doi.org/10.1016/j.dib.2019.104680 |
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