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Draft genome sequence data of Cercospora kikuchii, a causal agent of Cercospora leaf blight and purple seed stain of soybeans
Cercospora kikuchii (Tak. Matsumoto & Tomoy.) M.W. Gardner 1927 is an ascomycete fungal pathogen that causes Cercospora leaf blight and purple seed stain on soybean. Here, we report the first draft genome sequence and assembly of this pathogen. The C. kikuchii strain ARG_18_001 was isolated from...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6838444/ https://www.ncbi.nlm.nih.gov/pubmed/31720340 http://dx.doi.org/10.1016/j.dib.2019.104693 |
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author | Sautua, Francisco J. Gonzalez, Sergio A. Doyle, Vinson P. Berretta, Marcelo F. Gordó, Manuela Scandiani, Mercedes M. Rivarola, Maximo L. Fernandez, Paula Carmona, Marcelo A. |
author_facet | Sautua, Francisco J. Gonzalez, Sergio A. Doyle, Vinson P. Berretta, Marcelo F. Gordó, Manuela Scandiani, Mercedes M. Rivarola, Maximo L. Fernandez, Paula Carmona, Marcelo A. |
author_sort | Sautua, Francisco J. |
collection | PubMed |
description | Cercospora kikuchii (Tak. Matsumoto & Tomoy.) M.W. Gardner 1927 is an ascomycete fungal pathogen that causes Cercospora leaf blight and purple seed stain on soybean. Here, we report the first draft genome sequence and assembly of this pathogen. The C. kikuchii strain ARG_18_001 was isolated from soybean purple seed collected from San Pedro, Buenos Aires, Argentina, during the 2018 harvest. The genome was sequenced using a 2 × 150 bp paired-end method by Illumina NovaSeq 6000. The C. kikuchii protein-coding genes were predicted using FunGAP (Fungal Genome Annotation Pipeline). The draft genome assembly was 33.1 Mb in size with a GC-content of 53%. The gene prediction resulted in 14,856 gene models/14,721 protein coding genes. Genomic data of C. kikuchii presented here will be a useful resource for future studies of this pathosystem. The data can be accessed at GenBank under the accession number VTAY00000000 https://www.ncbi.nlm.nih.gov/nuccore/VTAY00000000. |
format | Online Article Text |
id | pubmed-6838444 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-68384442019-11-12 Draft genome sequence data of Cercospora kikuchii, a causal agent of Cercospora leaf blight and purple seed stain of soybeans Sautua, Francisco J. Gonzalez, Sergio A. Doyle, Vinson P. Berretta, Marcelo F. Gordó, Manuela Scandiani, Mercedes M. Rivarola, Maximo L. Fernandez, Paula Carmona, Marcelo A. Data Brief Agricultural and Biological Science Cercospora kikuchii (Tak. Matsumoto & Tomoy.) M.W. Gardner 1927 is an ascomycete fungal pathogen that causes Cercospora leaf blight and purple seed stain on soybean. Here, we report the first draft genome sequence and assembly of this pathogen. The C. kikuchii strain ARG_18_001 was isolated from soybean purple seed collected from San Pedro, Buenos Aires, Argentina, during the 2018 harvest. The genome was sequenced using a 2 × 150 bp paired-end method by Illumina NovaSeq 6000. The C. kikuchii protein-coding genes were predicted using FunGAP (Fungal Genome Annotation Pipeline). The draft genome assembly was 33.1 Mb in size with a GC-content of 53%. The gene prediction resulted in 14,856 gene models/14,721 protein coding genes. Genomic data of C. kikuchii presented here will be a useful resource for future studies of this pathosystem. The data can be accessed at GenBank under the accession number VTAY00000000 https://www.ncbi.nlm.nih.gov/nuccore/VTAY00000000. Elsevier 2019-10-21 /pmc/articles/PMC6838444/ /pubmed/31720340 http://dx.doi.org/10.1016/j.dib.2019.104693 Text en © 2019 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Agricultural and Biological Science Sautua, Francisco J. Gonzalez, Sergio A. Doyle, Vinson P. Berretta, Marcelo F. Gordó, Manuela Scandiani, Mercedes M. Rivarola, Maximo L. Fernandez, Paula Carmona, Marcelo A. Draft genome sequence data of Cercospora kikuchii, a causal agent of Cercospora leaf blight and purple seed stain of soybeans |
title | Draft genome sequence data of Cercospora kikuchii, a causal agent of Cercospora leaf blight and purple seed stain of soybeans |
title_full | Draft genome sequence data of Cercospora kikuchii, a causal agent of Cercospora leaf blight and purple seed stain of soybeans |
title_fullStr | Draft genome sequence data of Cercospora kikuchii, a causal agent of Cercospora leaf blight and purple seed stain of soybeans |
title_full_unstemmed | Draft genome sequence data of Cercospora kikuchii, a causal agent of Cercospora leaf blight and purple seed stain of soybeans |
title_short | Draft genome sequence data of Cercospora kikuchii, a causal agent of Cercospora leaf blight and purple seed stain of soybeans |
title_sort | draft genome sequence data of cercospora kikuchii, a causal agent of cercospora leaf blight and purple seed stain of soybeans |
topic | Agricultural and Biological Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6838444/ https://www.ncbi.nlm.nih.gov/pubmed/31720340 http://dx.doi.org/10.1016/j.dib.2019.104693 |
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