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Evaluating the performance of convolutional neural networks with direct acyclic graph architectures in automatic segmentation of breast lesion in US images

BACKGROUND: Outlining lesion contours in Ultra Sound (US) breast images is an important step in breast cancer diagnosis. Malignant lesions infiltrate the surrounding tissue, generating irregular contours, with spiculation and angulated margins, whereas benign lesions produce contours with a smooth o...

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Autores principales: Costa, Marly Guimarães Fernandes, Campos, João Paulo Mendes, de Aquino e Aquino, Gustavo, de Albuquerque Pereira, Wagner Coelho, Costa Filho, Cícero Ferreira Fernandes
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6839157/
https://www.ncbi.nlm.nih.gov/pubmed/31703642
http://dx.doi.org/10.1186/s12880-019-0389-2
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author Costa, Marly Guimarães Fernandes
Campos, João Paulo Mendes
de Aquino e Aquino, Gustavo
de Albuquerque Pereira, Wagner Coelho
Costa Filho, Cícero Ferreira Fernandes
author_facet Costa, Marly Guimarães Fernandes
Campos, João Paulo Mendes
de Aquino e Aquino, Gustavo
de Albuquerque Pereira, Wagner Coelho
Costa Filho, Cícero Ferreira Fernandes
author_sort Costa, Marly Guimarães Fernandes
collection PubMed
description BACKGROUND: Outlining lesion contours in Ultra Sound (US) breast images is an important step in breast cancer diagnosis. Malignant lesions infiltrate the surrounding tissue, generating irregular contours, with spiculation and angulated margins, whereas benign lesions produce contours with a smooth outline and elliptical shape. In breast imaging, the majority of the existing publications in the literature focus on using Convolutional Neural Networks (CNNs) for segmentation and classification of lesions in mammographic images. In this study our main objective is to assess the ability of CNNs in detecting contour irregularities in breast lesions in US images. METHODS: In this study we compare the performance of two CNNs with Direct Acyclic Graph (DAG) architecture and one CNN with a series architecture for breast lesion segmentation in US images. DAG and series architectures are both feedforward networks. The difference is that a DAG architecture could have more than one path between the first layer and end layer, whereas a series architecture has only one path from the beginning layer to the end layer. The CNN architectures were evaluated with two datasets. RESULTS: With the more complex DAG architecture, the following mean values were obtained for the metrics used to evaluate the segmented contours: global accuracy: 0.956; IOU: 0.876; F measure: 68.77%; Dice coefficient: 0.892. CONCLUSION: The CNN DAG architecture shows the best metric values used for quantitatively evaluating the segmented contours compared with the gold-standard contours. The segmented contours obtained with this architecture also have more details and irregularities, like the gold-standard contours.
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spelling pubmed-68391572019-11-12 Evaluating the performance of convolutional neural networks with direct acyclic graph architectures in automatic segmentation of breast lesion in US images Costa, Marly Guimarães Fernandes Campos, João Paulo Mendes de Aquino e Aquino, Gustavo de Albuquerque Pereira, Wagner Coelho Costa Filho, Cícero Ferreira Fernandes BMC Med Imaging Research Article BACKGROUND: Outlining lesion contours in Ultra Sound (US) breast images is an important step in breast cancer diagnosis. Malignant lesions infiltrate the surrounding tissue, generating irregular contours, with spiculation and angulated margins, whereas benign lesions produce contours with a smooth outline and elliptical shape. In breast imaging, the majority of the existing publications in the literature focus on using Convolutional Neural Networks (CNNs) for segmentation and classification of lesions in mammographic images. In this study our main objective is to assess the ability of CNNs in detecting contour irregularities in breast lesions in US images. METHODS: In this study we compare the performance of two CNNs with Direct Acyclic Graph (DAG) architecture and one CNN with a series architecture for breast lesion segmentation in US images. DAG and series architectures are both feedforward networks. The difference is that a DAG architecture could have more than one path between the first layer and end layer, whereas a series architecture has only one path from the beginning layer to the end layer. The CNN architectures were evaluated with two datasets. RESULTS: With the more complex DAG architecture, the following mean values were obtained for the metrics used to evaluate the segmented contours: global accuracy: 0.956; IOU: 0.876; F measure: 68.77%; Dice coefficient: 0.892. CONCLUSION: The CNN DAG architecture shows the best metric values used for quantitatively evaluating the segmented contours compared with the gold-standard contours. The segmented contours obtained with this architecture also have more details and irregularities, like the gold-standard contours. BioMed Central 2019-11-08 /pmc/articles/PMC6839157/ /pubmed/31703642 http://dx.doi.org/10.1186/s12880-019-0389-2 Text en © The Author(s). 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research Article
Costa, Marly Guimarães Fernandes
Campos, João Paulo Mendes
de Aquino e Aquino, Gustavo
de Albuquerque Pereira, Wagner Coelho
Costa Filho, Cícero Ferreira Fernandes
Evaluating the performance of convolutional neural networks with direct acyclic graph architectures in automatic segmentation of breast lesion in US images
title Evaluating the performance of convolutional neural networks with direct acyclic graph architectures in automatic segmentation of breast lesion in US images
title_full Evaluating the performance of convolutional neural networks with direct acyclic graph architectures in automatic segmentation of breast lesion in US images
title_fullStr Evaluating the performance of convolutional neural networks with direct acyclic graph architectures in automatic segmentation of breast lesion in US images
title_full_unstemmed Evaluating the performance of convolutional neural networks with direct acyclic graph architectures in automatic segmentation of breast lesion in US images
title_short Evaluating the performance of convolutional neural networks with direct acyclic graph architectures in automatic segmentation of breast lesion in US images
title_sort evaluating the performance of convolutional neural networks with direct acyclic graph architectures in automatic segmentation of breast lesion in us images
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6839157/
https://www.ncbi.nlm.nih.gov/pubmed/31703642
http://dx.doi.org/10.1186/s12880-019-0389-2
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