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Population genetic analysis of 36 Y-chromosomal STRs yields comprehensive insights into the forensic features and phylogenetic relationship of Chinese Tai-Kadai-speaking Bouyei

Male-specifically inherited Y-STRs, harboring the features of haploidy and lack of crossing over, have gained considerable attention in population genetics and forensic investigations. Goldeneye® Y-PLUS kit was a recently developed amplification system focused on the genetic diversity of 36 Y-chromo...

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Autores principales: Luo, Ya, Wu, Yan, Qian, Enfang, Wang, Qian, Wang, Qiyan, Zhang, Hongling, Wang, Xiaojuan, Zhang, Han, Yang, Meiqing, Ji, Jingyan, Ren, Zheng, Zhang, Ying, Tang, Jing, Huang, Jiang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6839857/
https://www.ncbi.nlm.nih.gov/pubmed/31703068
http://dx.doi.org/10.1371/journal.pone.0224601
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author Luo, Ya
Wu, Yan
Qian, Enfang
Wang, Qian
Wang, Qiyan
Zhang, Hongling
Wang, Xiaojuan
Zhang, Han
Yang, Meiqing
Ji, Jingyan
Ren, Zheng
Zhang, Ying
Tang, Jing
Huang, Jiang
author_facet Luo, Ya
Wu, Yan
Qian, Enfang
Wang, Qian
Wang, Qiyan
Zhang, Hongling
Wang, Xiaojuan
Zhang, Han
Yang, Meiqing
Ji, Jingyan
Ren, Zheng
Zhang, Ying
Tang, Jing
Huang, Jiang
author_sort Luo, Ya
collection PubMed
description Male-specifically inherited Y-STRs, harboring the features of haploidy and lack of crossing over, have gained considerable attention in population genetics and forensic investigations. Goldeneye® Y-PLUS kit was a recently developed amplification system focused on the genetic diversity of 36 Y-chromosomal short tandem repeats (Y-STRs) in East Asians. However, no population data and corresponding forensic features were reported in China. Here, 36 Y-STRs were first genotyped in 400 unrelated healthy Tai-Kadai-speaking Bouyei male individuals. A total of 371 alleles and 396 haplotypes could be detected, and the allelic frequencies ranged from 0.0025 to 0.9875. The haplotype diversity, random match probability and discrimination capacity values were 0.9999, 0.0026 and 0.9900, respectively. The gene diversity (GD) of 36 Y-STR loci in the studied group ranged from 0.0248 (DYS645) to 0.9601 (DYS385a/b). Population comparisons between the Guizhou Bouyei and 80 reference groups were performed via the AMOVA, MDS, and phylogenetic relationship reconstruction. The results showed that the population stratification was almost consistent with the geographic distribution and language-family, both among Chinese and worldwide ethnic groups. Our newly genotyped Bouyei samples show a close affinity with other Tai-Kadai-speaking groups in China and Southeast Asia. Our data may provide useful information for paternal lineage in the forensic application and population genetics, as well as evidence for archaeological and historical research.
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spelling pubmed-68398572019-11-15 Population genetic analysis of 36 Y-chromosomal STRs yields comprehensive insights into the forensic features and phylogenetic relationship of Chinese Tai-Kadai-speaking Bouyei Luo, Ya Wu, Yan Qian, Enfang Wang, Qian Wang, Qiyan Zhang, Hongling Wang, Xiaojuan Zhang, Han Yang, Meiqing Ji, Jingyan Ren, Zheng Zhang, Ying Tang, Jing Huang, Jiang PLoS One Research Article Male-specifically inherited Y-STRs, harboring the features of haploidy and lack of crossing over, have gained considerable attention in population genetics and forensic investigations. Goldeneye® Y-PLUS kit was a recently developed amplification system focused on the genetic diversity of 36 Y-chromosomal short tandem repeats (Y-STRs) in East Asians. However, no population data and corresponding forensic features were reported in China. Here, 36 Y-STRs were first genotyped in 400 unrelated healthy Tai-Kadai-speaking Bouyei male individuals. A total of 371 alleles and 396 haplotypes could be detected, and the allelic frequencies ranged from 0.0025 to 0.9875. The haplotype diversity, random match probability and discrimination capacity values were 0.9999, 0.0026 and 0.9900, respectively. The gene diversity (GD) of 36 Y-STR loci in the studied group ranged from 0.0248 (DYS645) to 0.9601 (DYS385a/b). Population comparisons between the Guizhou Bouyei and 80 reference groups were performed via the AMOVA, MDS, and phylogenetic relationship reconstruction. The results showed that the population stratification was almost consistent with the geographic distribution and language-family, both among Chinese and worldwide ethnic groups. Our newly genotyped Bouyei samples show a close affinity with other Tai-Kadai-speaking groups in China and Southeast Asia. Our data may provide useful information for paternal lineage in the forensic application and population genetics, as well as evidence for archaeological and historical research. Public Library of Science 2019-11-08 /pmc/articles/PMC6839857/ /pubmed/31703068 http://dx.doi.org/10.1371/journal.pone.0224601 Text en © 2019 Luo et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Luo, Ya
Wu, Yan
Qian, Enfang
Wang, Qian
Wang, Qiyan
Zhang, Hongling
Wang, Xiaojuan
Zhang, Han
Yang, Meiqing
Ji, Jingyan
Ren, Zheng
Zhang, Ying
Tang, Jing
Huang, Jiang
Population genetic analysis of 36 Y-chromosomal STRs yields comprehensive insights into the forensic features and phylogenetic relationship of Chinese Tai-Kadai-speaking Bouyei
title Population genetic analysis of 36 Y-chromosomal STRs yields comprehensive insights into the forensic features and phylogenetic relationship of Chinese Tai-Kadai-speaking Bouyei
title_full Population genetic analysis of 36 Y-chromosomal STRs yields comprehensive insights into the forensic features and phylogenetic relationship of Chinese Tai-Kadai-speaking Bouyei
title_fullStr Population genetic analysis of 36 Y-chromosomal STRs yields comprehensive insights into the forensic features and phylogenetic relationship of Chinese Tai-Kadai-speaking Bouyei
title_full_unstemmed Population genetic analysis of 36 Y-chromosomal STRs yields comprehensive insights into the forensic features and phylogenetic relationship of Chinese Tai-Kadai-speaking Bouyei
title_short Population genetic analysis of 36 Y-chromosomal STRs yields comprehensive insights into the forensic features and phylogenetic relationship of Chinese Tai-Kadai-speaking Bouyei
title_sort population genetic analysis of 36 y-chromosomal strs yields comprehensive insights into the forensic features and phylogenetic relationship of chinese tai-kadai-speaking bouyei
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6839857/
https://www.ncbi.nlm.nih.gov/pubmed/31703068
http://dx.doi.org/10.1371/journal.pone.0224601
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